qaGating: Quality assurance check

Description Usage Arguments Value Examples

View source: R/generalFunctions.R

Description

Check whether a flowSet (or a single flowFrame) contains empty values, in which case normalization may fail (divide by zero). This is particularly useful for removing wash wells from a flowSet.

Usage

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qaGating(x, threshold = 100)

Arguments

x

flowSet or flowFrame to be checked

threshold

flowFrames with fewer events than this threshold will be identified.

Value

A vector containing the flowFrames with fewer events than the threshold.

Examples

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plate1<-read.flowSet(path = system.file("extdata", "ss_example", package =
"flowTime"), alter.names = TRUE)
qaGating(plate1)

flowTime documentation built on Nov. 8, 2020, 8:13 p.m.