API for gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies
| Global functions | |
|---|---|
| .SnpMatrixCisToSummex | Source code |
| .clipPCs.SE | Source code |
| .collapseToBuf.raw | Source code |
| .eqBox | Source code |
| .transStoreAccessor_sing | Source code |
| .updateBuf | Source code |
| AllAssoc | Man page Source code |
| FDRsupp-class | Man page |
| ScoreDF | Source code |
| TransChunk | Man page Source code |
| TransChunk-class | Man page |
| TransStore | Man page Source code |
| TransStore-class | Man page |
| addFDRfunc | Source code |
| addFDRmodel | Source code |
| allregs | Source code |
| band2feats | Source code |
| bhwedemo | Source code |
| bindHWE.clo | Source code |
| chantmpl | Source code |
| cisAssoc | Man page Source code |
| cisCount | Man page Source code |
| cisEsts | Man page Source code |
| clipPCs | Man page |
| clipPCs,RangedSummarizedExperiment,numeric,logical-method | Man page |
| clipPCs,RangedSummarizedExperiment,numeric,missing-method | Man page |
| clipPCs,SummarizedExperiment,numeric,logical-method | Man page |
| clipPCs,SummarizedExperiment,numeric,missing-method | Man page |
| collapseToBuf | Source code |
| collapse_multiPerm | Man page Source code |
| describe | Man page |
| describe,TransStore-method | Man page |
| dfrToFDR | Source code |
| directPlot | Man page Source code |
| distToGene | Man page |
| distToGene.slow | Source code |
| enumerateByFDR | Man page |
| eqBox2 | Man page |
| eqBox3 | Man page |
| eqDesc2 | Man page |
| filtFDR | Man page |
| filteredDFwPerm | Man page Source code |
| findDone2 | Source code |
| gQTLs | Man page Source code |
| gQTLstats | Man page |
| gQTLstats-package | Man page |
| gQTLswarm | Man page |
| getFDRfunc | Man page |
| getFDRfunc,FDRsupp-method | Man page |
| getTab | Man page |
| getTab,FDRsupp-method | Man page |
| getTransRegistries | Man page Source code |
| hmm878 | Man page |
| manhWngr | Man page Source code |
| maxByProbe | Source code |
| maxBySNP | Source code |
| mixedVCFtoSnpMatrix | Man page Source code |
| nregs | Source code |
| nthreg | Source code |
| pifdr | Man page Source code |
| pifdr2 | Man page Source code |
| pifdr3 | Man page Source code |
| plot | Man page |
| plot.senstab | Man page Source code |
| plot.table.sensobj | Source code |
| prep.cisAssocNB | Man page Source code |
| qqStore | Man page Source code |
| queryVCF | Man page |
| rawFDR | Man page |
| reconstruct | Source code |
| regressOut | Man page Source code |
| sampsInVCF | Source code |
| sensByProbe | Man page |
| senstab | Man page Source code |
| setFDRfunc | Man page |
| statsByRank_sing | Source code |
| storeToFDR | Man page Source code |
| storeToFDRByProbe | Man page Source code |
| storeToFf | Man page |
| storeToHist | Man page Source code |
| storeToMaxAssocBySNP | Man page Source code |
| storeToQuantiles | Man page Source code |
| table_sensobj_thresh | Man page Source code |
| tqbrowser | Man page Source code |
| transAssoc | Man page Source code |
| transBrowse | Man page Source code |
| transBrowse2 | Man page Source code |
| transTable | Man page Source code |
| tsByRank | Man page |
| tsByRankAccum | Man page |
| tsByRankAccum_sing | Man page Source code |
| tsByRank_sing | Man page Source code |
| tsIndex.reg | Man page Source code |
| txsPlot | Man page |
| txsPlot.old | Source code |
| vecToQuantiles | Source code |
