TransStore: Instance constructor for managing trans gQTL results

In gQTLstats: gQTLstats: computationally efficient analysis for eQTL and allied studies

Description

Instance constructor for managing trans gQTL results

Usage

TransStore(regs, paths = NULL)
tsIndex.reg(tsin, ind)

Arguments

regs	a list of Registry instances, typically one per (variant-oriented) chromosome
paths	if desired, paths to folders for which loadRegistry succeeds, used instead of regs
tsin	a TransStore instance
ind	index of registry to index

Details

tsIndex.reg is experimental, producing a hash mapping snps to registry job identifiers, to support rapid store-level retrieval of locus-specific findings.

Value

instance of TransStore-class

Examples

## Not run:   # dec 2017 changes to BatchJobs lead to errors
if (require(geuvStore2) && require(doParallel)) {
  registerDoSEQ()
  r17 = g17transRegistry()
  r18 = g18transRegistry()
  g1718 = TransStore(list(r17, r18))
  g1718
  }
 
## End(Not run) # end dontrun

gQTLstats documentation built on Nov. 8, 2020, 7:53 p.m.