API for gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies

Global functions
.SnpMatrixCisToSummex Source code
.clipPCs.SE Source code
.collapseToBuf.raw Source code
.eqBox Source code
.transStoreAccessor_sing Source code
.updateBuf Source code
AllAssoc Man page Source code
FDRsupp-class Man page
ScoreDF Source code
TransChunk Man page Source code
TransChunk-class Man page
TransStore Man page Source code
TransStore-class Man page
addFDRfunc Source code
addFDRmodel Source code
allregs Source code
band2feats Source code
bhwedemo Source code
bindHWE.clo Source code
chantmpl Source code
cisAssoc Man page Source code
cisCount Man page Source code
cisEsts Man page Source code
clipPCs Man page
clipPCs,RangedSummarizedExperiment,numeric,logical-method Man page
clipPCs,RangedSummarizedExperiment,numeric,missing-method Man page
clipPCs,SummarizedExperiment,numeric,logical-method Man page
clipPCs,SummarizedExperiment,numeric,missing-method Man page
collapseToBuf Source code
collapse_multiPerm Man page Source code
describe Man page
describe,TransStore-method Man page
dfrToFDR Source code
directPlot Man page Source code
distToGene Man page
distToGene.slow Source code
enumerateByFDR Man page
eqBox2 Man page
eqBox3 Man page
eqDesc2 Man page
filtFDR Man page
filteredDFwPerm Man page Source code
findDone2 Source code
gQTLs Man page Source code
gQTLstats Man page
gQTLstats-package Man page
gQTLswarm Man page
getFDRfunc Man page
getFDRfunc,FDRsupp-method Man page
getTab Man page
getTab,FDRsupp-method Man page
getTransRegistries Man page Source code
hmm878 Man page
manhWngr Man page Source code
maxByProbe Source code
maxBySNP Source code
mixedVCFtoSnpMatrix Man page Source code
nregs Source code
nthreg Source code
pifdr Man page Source code
pifdr2 Man page Source code
pifdr3 Man page Source code
plot Man page
plot.senstab Man page Source code
plot.table.sensobj Source code
prep.cisAssocNB Man page Source code
qqStore Man page Source code
queryVCF Man page
rawFDR Man page
reconstruct Source code
regressOut Man page Source code
sampsInVCF Source code
sensByProbe Man page
senstab Man page Source code
setFDRfunc Man page
statsByRank_sing Source code
storeToFDR Man page Source code
storeToFDRByProbe Man page Source code
storeToFf Man page
storeToHist Man page Source code
storeToMaxAssocBySNP Man page Source code
storeToQuantiles Man page Source code
table_sensobj_thresh Man page Source code
tqbrowser Man page Source code
transAssoc Man page Source code
transBrowse Man page Source code
transBrowse2 Man page Source code
transTable Man page Source code
tsByRank Man page
tsByRankAccum Man page
tsByRankAccum_sing Man page Source code
tsByRank_sing Man page Source code
tsIndex.reg Man page Source code
txsPlot Man page
txsPlot.old Source code
vecToQuantiles Source code
gQTLstats documentation built on April 29, 2020, 3:45 a.m.