manhWngr: manhattan plot with named GRanges

In gQTLstats: gQTLstats: computationally efficient analysis for eQTL and allied studies

Description

manhattan plot with named GRanges

Usage

manhWngr(store, probeid = "ENSG00000183814.10", sym = "LIN9", fdrsupp, namedGR, slstyle = "NCBI", xlab.in = sym, ylab.in = "-log10 FDR", applyFDRfilter = TRUE)

Arguments

store	instance of ciseStore-class
probeid	name of feature identifier to use for cis association
sym	symbol for feature identifier
fdrsupp	instance of FDRsupp-class
namedGR	GRanges instance with 'name' in mcols element
slstyle	seqlevelsStyle
xlab.in	x axis label
ylab.in	y axis label
applyFDRfilter	if TRUE, use the filter defined in the filterUsed element of the object supplied as fdrsupp on the output

Examples

require(geuvStore2)
require(gQTLBase)
store = makeGeuvStore2()
data(hmm878)
data(filtFDR)
manhWngr(store, fdrsupp=filtFDR, namedGR=hmm878)

gQTLstats documentation built on Nov. 8, 2020, 7:53 p.m.