Files in gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
build/partial.rdb
data/sensByProbe.rda
data/rawFDR.rda
data/tbgaOrmdl3.rda
data/bigrawFDR.rda
data/bigfiltFDR.rda
data/hmm878.rda
data/datalist
data/sigInlit.rda
data/cyto37n.rda
data/filtFDR.rda
R/getRegs.R
R/qqStore.R
R/allS4.R
R/cisEsts.R
R/cisAssocPlus.R
R/VcfStack2.R
R/collapse_multiPerm.R
R/bhwe.R
R/tqbrowser.R
R/cisCount.R
R/statsByRank.R
R/transChunk.R
R/eqBox3.R
R/filters.R
R/storeStats.R
R/tsIndex.R
R/transBrowse2.R
R/queryVCF.R
R/pifdr.R
R/manhW878.R
R/bufferedTrans.R
R/senstab.R
R/plot.sensobj.thresh.R
R/gmod2.R
R/buf.R
R/transBrowse.R
R/mixedVcfToSM.R
vignettes/gQTLstats.Rmd
man/filtFDR.Rd
man/eqBox2.Rd
man/hmm878.Rd
man/gQTLs.Rd
man/mixedVCFtoSnpMatrix.Rd
man/qqStore.Rd
man/cisAssoc.Rd
man/storeToStats.Rd
man/queryVCF.Rd
man/enumerateByFDR.Rd
man/pifdr.Rd
man/TransStore-class.Rd
man/senstab.Rd
man/tsByRank.Rd
man/setFDRfunc.Rd
man/clipPCs.Rd
man/TransStore.Rd
man/transAssoc.Rd
man/FDRsupp-class.Rd
man/manhWngr.Rd
man/gQTLstats-package.Rd
man/transBrowse.Rd
man/directPlot.Rd
man/txsPlot.Rd
man/tqbrowser.Rd
tests/test-all.R
inst/doc/gQTLstats.html
inst/doc/gQTLstats.R
inst/doc/gQTLstats.Rmd
inst/vcf/lit20.vcf.gz
inst/vcf/polytype.vcf
inst/vcf/polytypeSNV.vcf
inst/vcf/GLdemo.vcf
inst/vcf/c20exch.vcf.gz
inst/vcf/small_1.vcf.gz.tbi
inst/vcf/c20exch.vcf.gz.tbi
inst/vcf/litv.vcf.gz.tbi
inst/vcf/README.txt
inst/vcf/litv.vcf.gz
inst/vcf/small_1.vcf.gz
inst/vcf/lit20.vcf.gz.tbi
inst/vcf/mixedVcfToSM.R
inst/scripts/README.txt
inst/scripts/geuvFull/tg_250k.rda
inst/scripts/geuvFull/gsvs.rda
inst/scripts/geuvFull/runit.R
inst/scripts/geuvFull/runit3.R
inst/scripts/sensBySNP/bysnpBat.R
inst/scripts/sensByProbe/sensanal2.R
inst/registries/chr17-export/conf.RData
inst/registries/chr17-export/registry.RData
inst/registries/chr17-export/BatchJobs.db
inst/registries/chr17-export/jobs/94/94-result.RData
inst/registries/chr17-export/jobs/94/94.R
inst/registries/chr17-export/jobs/94/94.out
inst/registries/chr17-export/jobs/95/95.R
inst/registries/chr17-export/jobs/95/95.out
inst/registries/chr17-export/jobs/95/95-result.RData
inst/registries/chr17-export/jobs/03/3-result.RData
inst/registries/chr17-export/jobs/03/3.R
inst/registries/chr17-export/jobs/03/3.out
inst/registries/chr17-export/jobs/02/2-result.RData
inst/registries/chr17-export/jobs/02/2.out
inst/registries/chr17-export/jobs/02/2.R
inst/registries/chr17-export/jobs/01/1-result.RData
inst/registries/chr17-export/jobs/01/1.R
inst/registries/chr17-export/jobs/01/1.out
inst/registries/chr17-export/functions/ae62592fc95f62f2efa7fadeacc36f19.RData
inst/registries/chr17-export/resources/resources_1480823330.RData
inst/registries/chr6-export/conf.RData
inst/registries/chr6-export/registry.RData
inst/registries/chr6-export/BatchJobs.db
inst/registries/chr6-export/jobs/91/91.R
inst/registries/chr6-export/jobs/91/91.out
inst/registries/chr6-export/jobs/81/81.out
inst/registries/chr6-export/jobs/81/81.R
inst/registries/chr6-export/jobs/70/70.R
inst/registries/chr6-export/jobs/70/70.out
inst/registries/chr6-export/jobs/80/80-result.RData
inst/registries/chr6-export/jobs/80/80.out
inst/registries/chr6-export/jobs/80/80.R
inst/registries/chr6-export/jobs/02/2-result.RData
inst/registries/chr6-export/jobs/02/2.out
inst/registries/chr6-export/jobs/02/2.R
inst/registries/chr6-export/jobs/90/90.out
inst/registries/chr6-export/jobs/90/90.R
inst/registries/chr6-export/jobs/01/1-result.RData
inst/registries/chr6-export/jobs/01/1.R
inst/registries/chr6-export/jobs/01/1.out
inst/registries/chr6-export/functions/a9ee5dd80637c905e1fcebd36385a8bc.RData
inst/registries/chr6-export/pending/pending_d_done_100.sql
inst/registries/chr6-export/pending/pending_c_started_71.sql
inst/registries/chr6-export/pending/pending_e_error_37.sql
inst/registries/chr6-export/pending/pending_c_started_38.sql
inst/registries/chr6-export/pending/pending_c_started_41.sql
inst/registries/chr6-export/pending/pending_c_started_39.sql
inst/registries/chr6-export/pending/pending_e_error_18.sql
inst/registries/chr6-export/pending/pending_c_started_89.sql
inst/registries/chr6-export/pending/pending_d_done_87.sql
inst/registries/chr6-export/pending/pending_c_started_50.sql
inst/registries/chr6-export/pending/pending_c_started_42.sql
inst/registries/chr6-export/pending/pending_e_error_81.sql
inst/registries/chr6-export/pending/pending_e_error_12.sql
inst/registries/chr6-export/pending/pending_d_done_34.sql
inst/registries/chr6-export/pending/pending_e_error_58.sql
inst/registries/chr6-export/pending/pending_c_started_4.sql
inst/registries/chr6-export/pending/pending_d_done_54.sql
inst/registries/chr6-export/pending/pending_c_started_56.sql
inst/registries/chr6-export/pending/pending_c_started_82.sql
inst/registries/chr6-export/pending/pending_e_error_43.sql
inst/registries/chr6-export/pending/pending_c_started_69.sql
inst/registries/chr6-export/pending/pending_c_started_28.sql
inst/registries/chr6-export/pending/pending_e_error_56.sql
inst/registries/chr6-export/pending/pending_d_done_51.sql
inst/registries/chr6-export/pending/pending_c_started_19.sql
inst/registries/chr6-export/pending/pending_e_error_95.sql
inst/registries/chr6-export/pending/pending_e_error_6.sql
inst/registries/chr6-export/pending/pending_e_error_91.sql
inst/registries/chr6-export/pending/pending_c_started_96.sql
inst/registries/chr6-export/pending/pending_d_done_94.sql
inst/registries/chr6-export/pending/pending_e_error_20.sql
inst/registries/chr6-export/pending/pending_e_error_99.sql
inst/registries/chr6-export/pending/pending_c_started_65.sql
inst/registries/chr6-export/pending/pending_e_error_70.sql
inst/registries/chr6-export/pending/pending_e_error_45.sql
inst/registries/chr6-export/pending/pending_c_started_57.sql
inst/registries/chr6-export/pending/pending_d_done_28.sql
inst/registries/chr6-export/pending/pending_c_started_68.sql
inst/registries/chr6-export/pending/pending_c_started_31.sql
inst/registries/chr6-export/pending/pending_c_started_88.sql
inst/registries/chr6-export/pending/pending_c_started_81.sql
inst/registries/chr6-export/pending/pending_c_started_9.sql
inst/registries/chr6-export/pending/pending_c_started_95.sql
inst/registries/chr6-export/pending/pending_c_started_12.sql
inst/registries/chr6-export/pending/pending_d_done_65.sql
inst/registries/chr6-export/pending/pending_c_started_94.sql
inst/registries/chr6-export/pending/pending_d_done_4.sql
inst/registries/chr6-export/pending/pending_c_started_51.sql
inst/registries/chr6-export/pending/pending_e_error_98.sql
inst/registries/chr6-export/pending/pending_d_done_82.sql
inst/registries/chr6-export/pending/pending_d_done_85.sql
inst/registries/chr6-export/pending/pending_c_started_99.sql
inst/registries/chr6-export/pending/pending_c_started_92.sql
inst/registries/chr6-export/pending/pending_e_error_92.sql
inst/registries/chr6-export/pending/pending_c_started_18.sql
inst/registries/chr6-export/pending/pending_c_started_100.sql
inst/registries/chr6-export/pending/pending_d_done_23.sql
inst/registries/chr6-export/pending/pending_e_error_61.sql
inst/registries/chr6-export/pending/pending_c_started_78.sql
inst/registries/chr6-export/pending/pending_e_error_90.sql
inst/registries/chr6-export/pending/pending_e_error_69.sql
inst/registries/chr6-export/pending/pending_e_error_50.sql
inst/registries/chr6-export/pending/pending_d_done_59.sql
inst/registries/chr6-export/pending/pending_e_error_9.sql
inst/registries/chr6-export/pending/pending_e_error_63.sql
inst/registries/chr6-export/pending/pending_e_error_97.sql
inst/registries/chr6-export/pending/pending_d_done_96.sql
inst/registries/chr6-export/pending/pending_c_started_85.sql
inst/registries/chr6-export/pending/pending_d_done_86.sql
inst/registries/chr6-export/pending/pending_c_started_98.sql
inst/registries/chr6-export/pending/pending_c_started_79.sql
inst/registries/chr6-export/pending/pending_c_started_66.sql
inst/registries/chr6-export/pending/pending_c_started_34.sql
inst/registries/chr6-export/pending/pending_c_started_47.sql
inst/registries/chr6-export/pending/pending_e_error_78.sql
inst/registries/chr6-export/pending/pending_c_started_86.sql
inst/registries/chr6-export/pending/pending_c_started_45.sql
inst/registries/chr6-export/pending/pending_d_done_79.sql
inst/registries/chr6-export/pending/pending_d_done_15.sql
inst/registries/chr6-export/pending/pending_c_started_14.sql
inst/registries/chr6-export/pending/pending_c_started_32.sql
inst/registries/chr6-export/pending/pending_c_started_63.sql
inst/registries/chr6-export/pending/pending_c_started_27.sql
inst/registries/chr6-export/pending/pending_d_done_77.sql
inst/registries/chr6-export/pending/pending_d_done_89.sql
inst/registries/chr6-export/pending/pending_d_done_24.sql
inst/registries/chr6-export/pending/pending_d_done_40.sql
inst/registries/chr6-export/pending/pending_e_error_27.sql
inst/registries/chr6-export/pending/pending_e_error_55.sql
inst/registries/chr6-export/pending/pending_c_started_90.sql
inst/registries/chr6-export/pending/pending_c_started_46.sql
inst/registries/chr6-export/pending/pending_c_started_72.sql
inst/registries/chr6-export/pending/pending_c_started_55.sql
inst/registries/chr6-export/pending/pending_d_done_47.sql
inst/registries/chr6-export/pending/pending_c_started_40.sql
inst/registries/chr6-export/pending/pending_e_error_52.sql
inst/registries/chr6-export/pending/pending_c_started_59.sql
inst/registries/chr6-export/pending/pending_e_error_88.sql
inst/registries/chr6-export/pending/pending_e_error_67.sql
inst/registries/chr6-export/pending/pending_d_done_41.sql
inst/registries/chr6-export/pending/pending_d_done_74.sql
inst/registries/chr6-export/pending/pending_c_started_37.sql
inst/registries/chr6-export/pending/pending_d_done_48.sql
inst/registries/chr6-export/pending/pending_d_done_68.sql
inst/registries/chr6-export/pending/pending_c_started_52.sql
inst/registries/chr6-export/pending/pending_e_error_66.sql
inst/registries/chr6-export/pending/pending_c_started_67.sql
inst/registries/chr6-export/pending/pending_c_started_6.sql
inst/registries/chr6-export/pending/pending_e_error_14.sql
inst/registries/chr6-export/pending/pending_c_started_61.sql
inst/registries/chr6-export/pending/pending_d_done_31.sql
inst/registries/chr6-export/pending/pending_c_started_23.sql
inst/registries/chr6-export/pending/pending_c_started_58.sql
inst/registries/chr6-export/pending/pending_c_started_93.sql
inst/registries/chr6-export/pending/pending_c_started_74.sql
inst/registries/chr6-export/pending/pending_c_started_24.sql
inst/registries/chr6-export/pending/pending_e_error_38.sql
inst/registries/chr6-export/pending/pending_e_error_57.sql
inst/registries/chr6-export/pending/pending_c_started_54.sql
inst/registries/chr6-export/pending/pending_c_started_87.sql
inst/registries/chr6-export/pending/pending_e_error_84.sql
inst/registries/chr6-export/pending/pending_c_started_15.sql
inst/registries/chr6-export/pending/pending_c_started_91.sql
inst/registries/chr6-export/pending/pending_d_done_32.sql
inst/registries/chr6-export/pending/pending_e_error_42.sql
inst/registries/chr6-export/pending/pending_d_done_71.sql
inst/registries/chr6-export/pending/pending_e_error_46.sql
inst/registries/chr6-export/pending/pending_c_started_20.sql
inst/registries/chr6-export/pending/pending_c_started_97.sql
inst/registries/chr6-export/pending/pending_c_started_48.sql
inst/registries/chr6-export/pending/pending_d_done_39.sql
inst/registries/chr6-export/pending/pending_e_error_93.sql
inst/registries/chr6-export/pending/pending_c_started_43.sql
inst/registries/chr6-export/pending/pending_c_started_70.sql
inst/registries/chr6-export/pending/pending_e_error_19.sql
inst/registries/chr6-export/pending/pending_d_done_72.sql
inst/registries/chr6-export/pending/pending_c_started_77.sql
inst/registries/chr6-export/pending/pending_c_started_84.sql
inst/registries/chr6-export/pending/pending_c_started_53.sql
inst/registries/chr6-export/pending/pending_e_error_53.sql
inst/registries/chr6-export/resources/resources_1481032968.RData
inst/registries/chr6-export/resources/resources_1480943073.RData
inst/registries/chr6-export/resources/resources_1480823186.RData
inst/unitTests/test_gQTLstats.R
