grid.norm: Normalization by grid of Spot
In genArise: Microarray Analysis tool
Description
Usage
Arguments
Value
Examples
Description
This function normalize R and I values and fit the value of Cy5 for each
grid in the spot that it receives as argument. In this function the
dimension of grid is (meta-row * meta-column).
Usage
1
grid.norm(mySpot, nr, nc)
Arguments
mySpot
Spot object for one microarray.
nr
Total of meta-row.
nc
Total of meta-column.
Value
Spot object with the grid normalization done.
Examples
1
2
3
4
5
data(Simon)
## background correction and save it in c.spot
c.spot <- bg.correct(Simon)
## normalization and save it in n.spot
n.spot <- grid.norm(c.spot, 23, 24)
genArise documentation built on Nov. 8, 2020, 6:29 p.m.
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Description Usage Arguments Value Examples
Description
This function normalize R and I values and fit the value of Cy5 for each grid in the spot that it receives as argument. In this function the dimension of grid is (meta-row * meta-column).
Usage
1 | grid.norm(mySpot, nr, nc)
|
Arguments
mySpot |
Spot object for one microarray. |
nr |
Total of meta-row. |
nc |
Total of meta-column. |
Value
Spot object with the grid normalization done.
Examples
1 2 3 4 5 | data(Simon)
## background correction and save it in c.spot
c.spot <- bg.correct(Simon)
## normalization and save it in n.spot
n.spot <- grid.norm(c.spot, 23, 24)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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