spotUnique: Replicate filtering

Description Usage Arguments Value Examples

Description

We consider replicate measures of two samples and adjust the log(ratio,2) measures for each gene so that the transformed values are equal. To do this we take the geometric mean.\ This procedure can be extended to averaging over n replicates.

Usage

1
spotUnique(mySpot)

Arguments

mySpot

Spot object for one microarray.

Value

Spot object without duplicates

Examples

1
2
3
4
data(Simon)
c.spot <- bg.correct(Simon)
f.spot <- filter.spot(c.spot)
spotUnique(mySpot = f.spot)


Search within the genArise package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.