API for geneplast
Evolutionary and plasticity analysis of orthologous groups
| Global functions | |
|---|---|
| .plot.lcas | Source code |
| .plot.phylo | Source code |
| OGP-class | Man page |
| OGR-class | Man page |
| areColors | Source code |
| brmethod | Source code |
| cogAbundance | Source code |
| cogDiversity | Source code |
| epidx | Source code |
| gedAdjDscore | Source code |
| geneplast | Man page |
| geneplast-package | Man page |
| geneplast.checks | Source code |
| getBranches | Source code |
| getLCAs | Source code |
| getprobs | Source code |
| gpdata.gs | Man page |
| gplast | Man page |
| gplast,OGP-method | Man page |
| gplast.get | Man page |
| gplast.get,OGP-method | Man page |
| gplast.preprocess | Man page Source code |
| groot | Man page |
| groot,OGR-method | Man page |
| groot.get | Man page |
| groot.get,OGR-method | Man page |
| groot.integration,OGR-method | Man page |
| groot.plot | Man page Source code |
| groot.preprocess | Man page Source code |
| isParallel | Source code |
| ksmethod | Source code |
| ogr2igraph | Man page Source code |
| ogr2tni | Man page Source code |
| orthoCount | Source code |
| ppi.gs | Man page |
| rootCount | Source code |
| rotatePhyloTree | Source code |
| runPermutation | Source code |
| spBranches | Source code |
| tipOrder | Source code |
