deviation: Accessor and replacement functions for 'deviation' slot

In iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Description

Accessor and replacement functions for the deviation slot in a COBRAPerformance or COBRAPlot object.

Usage

deviation(x, ...)

deviation(x, ...) <- value

## S4 method for signature 'COBRAPerformance'
deviation(x)

## S4 replacement method for signature 'COBRAPerformance,data.frame'
deviation(x) <- value

## S4 replacement method for signature 'COBRAPlot,data.frame'
deviation(x) <- value

Arguments

x	A COBRAPerformance or COBRAPlot object.
...	Additional arguments.
value	A data frame giving information necessary to plots of deviations between observed and true scores for each method and each stratification level.

Value

The accessor function returns a data frame giving information necessary to plots of deviations between observed and true scores for each method and each stratification level.

Author(s)

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                   aspects = "deviation")
head(deviation(cobraperf))

iCOBRA documentation built on April 17, 2021, 6:07 p.m.