padj: Accessor and replacement functions for 'padj' slot

In iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Description

Accessor and replacement functions for the padj slot in a COBRAData object.

Usage

padj(x, ...)

padj(x, ...) <- value

## S4 method for signature 'COBRAData'
padj(x)

## S4 replacement method for signature 'COBRAData,data.frame'
padj(x) <- value

Arguments

x	A COBRAData object.
...	Additional arguments.
value	A data frame containing adjusted p-values for each feature and each method.

Value

The accessor function returns a data frame containing adjusted p-values for each feature and each method.

Author(s)

Charlotte Soneson

Examples

data(cobradata_example)
head(padj(cobradata_example))

Example output

                       edgeR         voom
ENSG00000000457 2.833295e-01 1.375146e-01
ENSG00000000460 2.700376e-01 2.826398e-01
ENSG00000000938 9.232794e-01 9.399669e-01
ENSG00000000971 9.382227e-01 9.492325e-01
ENSG00000001460 6.333969e-20 4.574862e-09
ENSG00000001461 4.417195e-01 3.096840e-01

iCOBRA documentation built on April 17, 2021, 6:07 p.m.