plot_scatter: Plot scatter plots

In iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Description

Plot scatter plots, indicating the relationship between observed values and a continuous truth.

Usage

plot_scatter(
  cobraplot,
  title = "",
  stripsize = 10,
  titlecol = "black",
  pointsize = 3,
  doflip = FALSE,
  dolog = FALSE
)

Arguments

cobraplot	A COBRAPlot object.
title	A character string giving the title of the plot.
stripsize	A numeric value giving the size of the strip text, when the results are stratified by an annotation.
titlecol	A character string giving the color of the title.
pointsize	A numeric value giving the size of the plot characters.
doflip	A logical indicating whether to flip the axes when results are stratified by an annotation. By default (doflip = FALSE), stratification levels are shown as columns and methods as rows in the plot.
dolog	A logical indicating whether to log10-transform values before plotting.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                   aspects = "scatter")
cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                   incltruth = TRUE)
plot_scatter(cobraplot)

iCOBRA documentation built on April 17, 2021, 6:07 p.m.