infercnv: Infer Copy Number Variation from Single-Cell RNA-Seq Data

Using single-cell RNA-Seq expression to visualize CNV in cells.

Package overview README.md Visualizing Large-scale Copy Number Variation in Single-Cell RNA-Seq Expression Data

Vignettes Man pages API and functions Files

Package details
Author	Timothy Tickle [aut], Itay Tirosh [aut], Christophe Georgescu [aut, cre], Maxwell Brown [aut], Brian Haas [aut]
Bioconductor views	Bayesian CopyNumberVariation Genetics GenomicVariation HiddenMarkovModel SingleCell Software StatisticalMethod StructuralVariation Transcriptomics VariantDetection
Maintainer	Christophe Georgescu <cgeorges@broadinstitute.org>
License	BSD_3_clause + file LICENSE
Version	1.6.0
URL	https://github.com/broadinstitute/inferCNV/wiki
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("infercnv")`