SelectVar-print: 'print.SV' a SelectVar object Generic Print/Summary method...

Description Usage Arguments Value Author(s) See Also Examples

Description

print.SV a SelectVar object Generic Print/Summary method for SelectVar class output visualization.

Usage

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## S4 method for signature 'SelectVar'
print(x)

Arguments

x

SelectVar class object.

Value

according to the call

print

the console output the text with increasing detail of SelectVar object.

Author(s)

M L Zingaretti, J A Demey-Zambrano, J L Vicente-Villardon, J R Demey

See Also

SelectVar

Examples

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10
{

 data(NCI60Selec)
 fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
 A<-SelectVar(fit,Crit="p-val(Bonf)",perc=0.95)

 print(A)
 summary(A)

}

Example output

The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Coord.Select:
             PVR   HSPBAP1     ZFP36     GNPTAB     BACE2    ECHDC2      PPIC
XCoord  610.9698 -143.2330 -221.7316  -8.472996 1041.0561  293.2782 1054.9391
YCoord -322.5550  387.8573 -406.1842 460.770254  693.6809 -948.4085 -505.7297
          PRKD1   S100A1    PDLIM2       CA12    FAM57A      ETV3   LEPREL1
XCoord 936.5096  249.514 552.61632   748.5028 421.74003  39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
           GPC6     HERC1    VAMP3      MLF1     ANXA3  C1orf131   C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462   250.009 -261.4446  620.5819
YCoord  230.525  235.9062 101.3005  68.49096 -1719.124 -106.5732 -488.4033
             FGD3       CA14     CPNE7     PTGES      HELZ    TBC1D2     TOR2A
XCoord -1377.1020   44.55697 -220.4161  909.2101 -92.10326  570.3918 -233.4188
YCoord  -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
              F3     BACE1      SPEG      FERMT1   C19orf39    ARAP3
XCoord  695.0110  921.7503  918.9075   -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797   30.81431  95.9009
           KRT8P23    PTPN21      LHFP     ATP1A3  C10orf90      SC65      WWC2
XCoord    90.13505 776.14018 1609.7917   8.413108  736.2727 561.96299  861.4079
YCoord -1326.43876 -80.41194  305.9202 464.238436 1906.6591 -38.52365 -220.7640
               OCLN     SMAD3  C9orf30   FKBP10      SYNM     S100B    DUSP4
XCoord     5.682858  534.5561 435.4019 1305.826 1110.4731  285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125  328.910  721.3418 2733.5067 811.6252
       LOC344978       GMFG     S100B   S100A1  LEPREL1         GMFG     GPNMB
XCoord  469.3992 -1287.3549  281.2331  145.188 788.3745 -869.3529342  338.7627
YCoord -159.7674   139.9926 1678.1276 1467.845 -89.8902    0.6476851 2279.1900
            SC65      LHFP  C6orf218       PVR    PTPN21     TOR2A   C1orf131
XCoord 518.87401 1218.0860  180.5202  591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428  296.1415 1769.2114 -293.9604 -70.04085 -108.2214  -87.55788
             ACP5      PLP1     BACE1    FERMT1   S100A1   HSPBAP1     SOX10
XCoord   98.71329  237.7728  361.9432 -300.0214  156.052 -17.58142  194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
                PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7       -0.92   -0.92 -0.12   0.82  1.99   3.07 3.11 -4.77  -4.84  -2.03
BR.MDA_MB_231  1.28   -0.73  0.25  -0.79  2.94   2.80 1.08 -5.65  -5.60  -1.42
BR.HS578T      1.46   -0.95  0.97  -0.46  2.73   3.12 3.55  0.05  -5.87   1.87
BR.BT_549      1.69   -1.02  1.30  -0.26 -0.80   2.56 2.59 -5.57  -5.50   0.50
BR.T47D        0.24   -1.87  0.96   0.86  2.75   3.16 3.51 -5.88  -1.38  -0.94
CNS.SF_268     1.52   -1.16 -0.70  -1.07  2.09  -0.09 2.09 -0.01  -5.96   0.27
               CA12 FAM57A  ETV3 LEPREL1  GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7        3.85   0.23  0.24   -3.84 -6.81  0.24 -0.68 0.83 -1.08    -0.21
BR.MDA_MB_231 -0.40   0.89 -0.73    3.21 -6.25 -0.59  0.26 1.41  3.09    -2.28
BR.HS578T      2.63   0.03 -0.64    4.59 -0.10 -0.30  0.91 2.16 -3.88    -0.36
BR.BT_549     -0.94   0.52 -0.14    4.69  2.98 -0.74  0.91 2.57 -5.43    -0.31
BR.T47D        5.37  -0.72  0.28   -3.10  1.12  0.52  0.30 2.31  0.61    -0.15
CNS.SF_268    -4.33   2.01 -0.31    1.63 -0.66 -0.05  0.66 1.69 -2.82    -1.86
              C3orf59  FGD3  CA14 CPNE7 PTGES  HELZ TBC1D2 TOR2A    F3 BACE1
BR.MCF7         -0.89  0.83 -3.10 -0.81  3.15  0.11  -2.25  1.36 -4.28  1.70
BR.MDA_MB_231   -2.45 -5.80 -3.54 -2.37  2.09 -0.83   1.44  0.84  3.35  2.98
BR.HS578T       -0.83 -6.57 -3.48 -0.76 -0.20 -0.42  -1.69 -0.47  0.54  3.33
BR.BT_549        0.17 -6.99 -3.31  0.97  0.66 -0.74   1.97 -0.55 -3.85  3.32
BR.T47D         -0.20 -0.20 -3.15 -2.54  4.98 -0.03  -1.03  1.54 -3.64  2.90
CNS.SF_268      -0.29 -6.75 -3.04 -2.99  0.97 -0.16  -0.94 -0.65  1.01  3.01
              SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21  LHFP ATP1A3 C10orf90
BR.MCF7       1.68  -0.62     0.84 -3.50    5.24  -2.93 -5.24   0.47    -7.45
BR.MDA_MB_231 1.37   0.35    -0.89  1.38    0.72  -0.22  1.29   1.16    -7.51
BR.HS578T     4.25   0.47    -0.99  0.18   -1.96   0.11  1.99  -0.15    -4.45
BR.BT_549     3.52  -0.20    -0.37 -4.80   -2.55  -0.87  3.01   0.28    -4.05
BR.T47D       0.53   0.48     1.29 -3.54    4.52   0.64  0.77   0.14    -7.74
CNS.SF_268    1.59  -0.97    -1.30 -0.11   -1.41   0.03  2.69   0.36    -7.25
               SC65  WWC2  OCLN SMAD3 C9orf30 FKBP10  SYNM S100B DUSP4
BR.MCF7        1.03 -1.48  1.04 -0.37   -0.71   2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83  1.27 -2.93  1.84    1.58  -5.85 -0.68 -7.51  1.18
BR.HS578T      1.39  0.77 -3.88  1.46    0.85   3.33  0.96 -7.30 -1.05
BR.BT_549      0.90  0.67 -0.43  0.49    1.06   2.81 -1.07 -7.37  0.89
BR.T47D        1.33  0.63  0.28 -1.41   -1.38   0.41 -5.41 -7.74  0.93
CNS.SF_268    -0.12  1.52  0.20  1.58    1.43   1.84 -0.86 -7.25  2.18
              LOC344978  GMFG S100B S100A1 LEPREL1 GMFG GPNMB     SC65     LHFP
BR.MCF7           -1.33 -4.13  2.92   3.01    2.36 2.77  2.27 7.068981 2.732669
BR.MDA_MB_231      0.87 -2.11  2.31   2.58    4.89 2.26  2.05 4.881329 7.735258
BR.HS578T          1.41 -3.62  2.27   2.57    7.15 2.26  6.08 8.096910 9.634932
BR.BT_549          0.75 -3.18  2.34   2.58    7.10 2.31  2.08 7.085175 9.259418
BR.T47D           -1.71 -3.89  2.29   4.75    2.21 2.27  2.10 7.649733 5.581497
CNS.SF_268         0.49 -4.21  2.24   2.53    2.40 2.28  2.12 6.435531 9.566662
              C6orf218      PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7       2.286398 6.602582   3.19  5.44     5.88 1.98 2.60  3.54   2.83
BR.MDA_MB_231 2.286398 9.494251   5.41  5.21     4.67 1.77 2.36  5.85   5.23
BR.HS578T     2.286398 8.633170   5.04  3.89     6.16 1.72 2.32  6.48   5.34
BR.BT_549     2.286398 9.534073   4.29  3.79     4.67 1.84 2.49  5.86   3.49
BR.T47D       2.286398 7.052372   5.01  5.35     6.23 1.76 2.39  5.56   4.28
CNS.SF_268    2.286398 8.643488   5.07  3.91     4.18 1.77 2.39  5.96   3.32
              S100A1 HSPBAP1 SOX10
BR.MCF7         2.93    4.11  2.69
BR.MDA_MB_231   2.72    4.12  2.44
BR.HS578T       2.65    4.12  2.40
BR.BT_549       2.73    4.29  2.61
BR.T47D         5.30    4.23  2.47
CNS.SF_268      2.70    4.03  2.46
List Select Var:
[1] "LHFP"      "WWC2"      "LEPREL1"   "PVR"       "VAMP3"     "LOC344978"
Coord.Select:
             PVR   HSPBAP1     ZFP36     GNPTAB     BACE2    ECHDC2      PPIC
XCoord  610.9698 -143.2330 -221.7316  -8.472996 1041.0561  293.2782 1054.9391
YCoord -322.5550  387.8573 -406.1842 460.770254  693.6809 -948.4085 -505.7297
          PRKD1   S100A1    PDLIM2       CA12    FAM57A      ETV3   LEPREL1
XCoord 936.5096  249.514 552.61632   748.5028 421.74003  39.93145 1935.4024
YCoord 714.8630 1613.568 -31.83131 -1384.3171 -11.32688 226.79023 -199.0005
           GPC6     HERC1    VAMP3      MLF1     ANXA3  C1orf131   C3orf59
XCoord 1518.671 -140.6371 314.5608 968.00462   250.009 -261.4446  620.5819
YCoord  230.525  235.9062 101.3005  68.49096 -1719.124 -106.5732 -488.4033
             FGD3       CA14     CPNE7     PTGES      HELZ    TBC1D2     TOR2A
XCoord -1377.1020   44.55697 -220.4161  909.2101 -92.10326  570.3918 -233.4188
YCoord  -333.0911 1089.52577 -555.8145 -991.9564 191.19153 -685.8132 -109.1386
              F3     BACE1      SPEG      FERMT1   C19orf39    ARAP3
XCoord  695.0110  921.7503  918.9075   -86.66663 -259.11249 917.9891
YCoord -820.2737 -325.5115 -123.0136 -1451.32797   30.81431  95.9009
           KRT8P23    PTPN21      LHFP     ATP1A3  C10orf90      SC65      WWC2
XCoord    90.13505 776.14018 1609.7917   8.413108  736.2727 561.96299  861.4079
YCoord -1326.43876 -80.41194  305.9202 464.238436 1906.6591 -38.52365 -220.7640
               OCLN     SMAD3  C9orf30   FKBP10      SYNM     S100B    DUSP4
XCoord     5.682858  534.5561 435.4019 1305.826 1110.4731  285.6863 155.8950
YCoord -1278.325010 -375.0306 151.5125  328.910  721.3418 2733.5067 811.6252
       LOC344978       GMFG     S100B   S100A1  LEPREL1         GMFG     GPNMB
XCoord  469.3992 -1287.3549  281.2331  145.188 788.3745 -869.3529342  338.7627
YCoord -159.7674   139.9926 1678.1276 1467.845 -89.8902    0.6476851 2279.1900
            SC65      LHFP  C6orf218       PVR    PTPN21     TOR2A   C1orf131
XCoord 518.87401 1218.0860  180.5202  591.6283 221.65201 -224.6256 -272.75305
YCoord -68.34428  296.1415 1769.2114 -293.9604 -70.04085 -108.2214  -87.55788
             ACP5      PLP1     BACE1    FERMT1   S100A1   HSPBAP1     SOX10
XCoord   98.71329  237.7728  361.9432 -300.0214  156.052 -17.58142  194.9299
YCoord 1104.28852 1717.3694 -130.7099 -710.6592 1611.002 159.14372 1581.0812
Table Select:
                PVR HSPBAP1 ZFP36 GNPTAB BACE2 ECHDC2 PPIC PRKD1 S100A1 PDLIM2
BR.MCF7       -0.92   -0.92 -0.12   0.82  1.99   3.07 3.11 -4.77  -4.84  -2.03
BR.MDA_MB_231  1.28   -0.73  0.25  -0.79  2.94   2.80 1.08 -5.65  -5.60  -1.42
BR.HS578T      1.46   -0.95  0.97  -0.46  2.73   3.12 3.55  0.05  -5.87   1.87
BR.BT_549      1.69   -1.02  1.30  -0.26 -0.80   2.56 2.59 -5.57  -5.50   0.50
BR.T47D        0.24   -1.87  0.96   0.86  2.75   3.16 3.51 -5.88  -1.38  -0.94
CNS.SF_268     1.52   -1.16 -0.70  -1.07  2.09  -0.09 2.09 -0.01  -5.96   0.27
               CA12 FAM57A  ETV3 LEPREL1  GPC6 HERC1 VAMP3 MLF1 ANXA3 C1orf131
BR.MCF7        3.85   0.23  0.24   -3.84 -6.81  0.24 -0.68 0.83 -1.08    -0.21
BR.MDA_MB_231 -0.40   0.89 -0.73    3.21 -6.25 -0.59  0.26 1.41  3.09    -2.28
BR.HS578T      2.63   0.03 -0.64    4.59 -0.10 -0.30  0.91 2.16 -3.88    -0.36
BR.BT_549     -0.94   0.52 -0.14    4.69  2.98 -0.74  0.91 2.57 -5.43    -0.31
BR.T47D        5.37  -0.72  0.28   -3.10  1.12  0.52  0.30 2.31  0.61    -0.15
CNS.SF_268    -4.33   2.01 -0.31    1.63 -0.66 -0.05  0.66 1.69 -2.82    -1.86
              C3orf59  FGD3  CA14 CPNE7 PTGES  HELZ TBC1D2 TOR2A    F3 BACE1
BR.MCF7         -0.89  0.83 -3.10 -0.81  3.15  0.11  -2.25  1.36 -4.28  1.70
BR.MDA_MB_231   -2.45 -5.80 -3.54 -2.37  2.09 -0.83   1.44  0.84  3.35  2.98
BR.HS578T       -0.83 -6.57 -3.48 -0.76 -0.20 -0.42  -1.69 -0.47  0.54  3.33
BR.BT_549        0.17 -6.99 -3.31  0.97  0.66 -0.74   1.97 -0.55 -3.85  3.32
BR.T47D         -0.20 -0.20 -3.15 -2.54  4.98 -0.03  -1.03  1.54 -3.64  2.90
CNS.SF_268      -0.29 -6.75 -3.04 -2.99  0.97 -0.16  -0.94 -0.65  1.01  3.01
              SPEG FERMT1 C19orf39 ARAP3 KRT8P23 PTPN21  LHFP ATP1A3 C10orf90
BR.MCF7       1.68  -0.62     0.84 -3.50    5.24  -2.93 -5.24   0.47    -7.45
BR.MDA_MB_231 1.37   0.35    -0.89  1.38    0.72  -0.22  1.29   1.16    -7.51
BR.HS578T     4.25   0.47    -0.99  0.18   -1.96   0.11  1.99  -0.15    -4.45
BR.BT_549     3.52  -0.20    -0.37 -4.80   -2.55  -0.87  3.01   0.28    -4.05
BR.T47D       0.53   0.48     1.29 -3.54    4.52   0.64  0.77   0.14    -7.74
CNS.SF_268    1.59  -0.97    -1.30 -0.11   -1.41   0.03  2.69   0.36    -7.25
               SC65  WWC2  OCLN SMAD3 C9orf30 FKBP10  SYNM S100B DUSP4
BR.MCF7        1.03 -1.48  1.04 -0.37   -0.71   2.45 -3.60 -7.45 -2.54
BR.MDA_MB_231 -1.83  1.27 -2.93  1.84    1.58  -5.85 -0.68 -7.51  1.18
BR.HS578T      1.39  0.77 -3.88  1.46    0.85   3.33  0.96 -7.30 -1.05
BR.BT_549      0.90  0.67 -0.43  0.49    1.06   2.81 -1.07 -7.37  0.89
BR.T47D        1.33  0.63  0.28 -1.41   -1.38   0.41 -5.41 -7.74  0.93
CNS.SF_268    -0.12  1.52  0.20  1.58    1.43   1.84 -0.86 -7.25  2.18
              LOC344978  GMFG S100B S100A1 LEPREL1 GMFG GPNMB     SC65     LHFP
BR.MCF7           -1.33 -4.13  2.92   3.01    2.36 2.77  2.27 7.068981 2.732669
BR.MDA_MB_231      0.87 -2.11  2.31   2.58    4.89 2.26  2.05 4.881329 7.735258
BR.HS578T          1.41 -3.62  2.27   2.57    7.15 2.26  6.08 8.096910 9.634932
BR.BT_549          0.75 -3.18  2.34   2.58    7.10 2.31  2.08 7.085175 9.259418
BR.T47D           -1.71 -3.89  2.29   4.75    2.21 2.27  2.10 7.649733 5.581497
CNS.SF_268         0.49 -4.21  2.24   2.53    2.40 2.28  2.12 6.435531 9.566662
              C6orf218      PVR PTPN21 TOR2A C1orf131 ACP5 PLP1 BACE1 FERMT1
BR.MCF7       2.286398 6.602582   3.19  5.44     5.88 1.98 2.60  3.54   2.83
BR.MDA_MB_231 2.286398 9.494251   5.41  5.21     4.67 1.77 2.36  5.85   5.23
BR.HS578T     2.286398 8.633170   5.04  3.89     6.16 1.72 2.32  6.48   5.34
BR.BT_549     2.286398 9.534073   4.29  3.79     4.67 1.84 2.49  5.86   3.49
BR.T47D       2.286398 7.052372   5.01  5.35     6.23 1.76 2.39  5.56   4.28
CNS.SF_268    2.286398 8.643488   5.07  3.91     4.18 1.77 2.39  5.96   3.32
              S100A1 HSPBAP1 SOX10
BR.MCF7         2.93    4.11  2.69
BR.MDA_MB_231   2.72    4.12  2.44
BR.HS578T       2.65    4.12  2.40
BR.BT_549       2.73    4.29  2.61
BR.T47D         5.30    4.23  2.47
CNS.SF_268      2.70    4.03  2.46
List Select Var:
[1] "LHFP"      "WWC2"      "LEPREL1"   "PVR"       "VAMP3"     "LOC344978"

kimod documentation built on Nov. 1, 2018, 3:16 a.m.