DiStatis-CompPlot: Plot a 'CompPlot' of a DiStatis object

In kimod: A k-tables approach to integrate multiple Omics-Data

Description

Plot a CompPlot of a DiStatis object

Usage

## S4 method for signature 'DiStatis'
CompPlot(x,xlabProj=NULL, ylabProj=NULL,
xlabBar="Inertia(%)",ylabBar="Values",mainBar=NULL,mainProj=NULL,
pchPoints=15,legend=TRUE ,colBar="red",colObs="black",barPlot=TRUE,...)

Arguments

x	DiStatis class object.
xlabProj	character for the x-label title for plot
ylabProj	character for the x-label title for plot
xlabBar	character for the x-label title for barPlot
ylabBar	character for the y-label title for barPlot
mainBar	main to histogram plot
mainProj	main to proj plot
pchPoints	pch for points in plot.
legend	Logical. indicates whether the legend prints
colBar	character col for bars in the BarPlot
colObs	character col for observations in the plot
barPlot	logical indicates whether the barPlot is prints
...	additional parameters for plot

Value

plotted CompPlot/s of the component/s of the given DiStatis object.

Author(s)

M L Zingaretti, J A Demey-Zambrano, J L Vicente Villardon, J R Demey

Examples

{
## Not run: 
 data(NCI60Selec)
 Z2<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
 Colores2<-c(rep(colors()[657],5),rep(colors()[637],6),
 rep(colors()[537],7),rep(colors()[552],6),rep(colors()[57],10),
 rep(colors()[300],9),rep(colors()[461],7),rep(colors()[450],2),
 rep(colors()[432],8))
 Colores1<-c(rep("Breast",5),rep("CNS",6),rep("Colon",7),
 rep("Leukemia",6),rep("Melanoma",10),rep("Lung",9),rep("Ovarian",7),
 rep("Prostate",2),rep("Renal",8))
 CompPlot(Z2,xlabBar="",colObs=Colores2,pch=15,las=1,
 cex=2,legend=FALSE,barPlot=FALSE,cex.main=0.6,cex.lab=0.6,
 cex.axis=0.6,las=1)
 legend("topleft",unique(Colores1),col=unique(Colores2),
 bty="n",pch=16,cex=1)

## End(Not run)
}

kimod documentation built on April 28, 2020, 9:21 p.m.