Bootstrap-Class: Class 'Bootstrap': Bootstrap S4 class (kimod: k-tables...

In kimod: A k-tables approach to integrate multiple Omics-Data

Description

Bootstrap to DiStatis object.

Features

1. Bootstrap Implementation

2. Confidence Intervals from Bootstrap implementation

3. Plotting Bootstrap

Fields

• Ratios.Boot Ratios (with Bonferroni Correction for all observations in compromise from all dimensions)

• Comparisions.Boot Comparision (difference between observations) from all dimensions

• Elipses.Boot List of all projections from the elipses plot.

• Stability.Boot Bootstrap Stability

• QRO.Boot Rpresentation Quality of observations (Bootstrap)

• EigValues.Boot confidence interval for eigenvalues (from SVD Compromise)

• Inertia.Boot confidence interval for inertia(

Accesors

• Ratios.Boot(x), Ratios.Boot(x) <- value: Ratios (with Bonferroni Correction for all observations in compromise from all dimensions)

• Comparisions.Boot(x), Comparisions.Boot(x) <- value: Comparision (difference between observations) from all dimensions.

• Elipses.Boot(x), Elipses.Boot(x) <- value:List of all projections from the elipses plot.

• Stability.Boot(x), Stability.Boot(x) <- value: Bootstrap Stability.

• QRO.Boot(x), QRO.Boot(x) <- value: Representation Quality of observations (Bootstrap)

• EigValues.Boot(x), EigValues.Boot(x) <- value: confidence interval for eigenvalues (from SVD Compromise)

• Inertia.Boot(x), Inertia.Boot(x) <- value: confidence interval for inertia(%) of all dimensions (from SVD Compromise).

Bootstrap-general-functions

print

Basic output for Bootstrap class

summary

Basic statistics for Bootstrap class

Bootstrap

Getters for their respective slots.

Author(s)

M L Zingaretti, J A Demey-Zambrano, J L Vicente Villardon, J R Demey

References

1. Efron, B.,Tibshirani, RJ. (1993). An introduction to the bootstrap. New York: Chapman and Hall. 436p.

2. Ringrose, T.J. (1992). Bootstrapping and Correspondence Analysis in Archaeology. Journal of Archaeological. Science.19:615-629.

Examples

 showClass("Bootstrap")

Example output

Class "Bootstrap" [package "kimod"]

Slots:
                                                                              
Name:        Ratios.Boot Comparisions.Boot      Elipses.Boot    Stability.Boot
Class:        data.frame              list            matrix        data.frame
                                                            
Name:           QRO.Boot    EigValues.Boot      Inertia.Boot
Class:        data.frame        data.frame        data.frame

kimod documentation built on April 28, 2020, 9:21 p.m.