Bootstrap-print.Boot: 'print' or 'summary' a Bootstrap object

In kimod: A k-tables approach to integrate multiple Omics-Data

Description

Generic Print/Summary method for Bootstrap class output visualization.

Usage

## S4 method for signature 'Bootstrap'
print(x)

Arguments

x	Bootstrap class object.

Value

according to the call

print

console output text with increasing detail of Bootstrap object.

Author(s)

M L Zingaretti, J A Demey-Zambrano, J L Vicente-Villardon, J R Demey

Examples

{
 data(NCI60Selec)
 fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
 A<-Bootstrap(fit)

 print(A)


}

Example output

The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Ratios Boot:
                      Dim1        Dim2
BR.BT_549        9.7164694 -1.29638089
BR.HS578T       14.0849744 -0.71937930
BR.MCF7        -11.1360428 -1.34160259
BR.MDA_MB_231    6.9118668 -1.40884634
BR.T47D         -1.9492779 -1.40230636
CNS.SF_268      15.8627882 -0.76319134
CNS.SF_295      13.4114937  0.02261094
CNS.SF_539      16.6247001  0.39865637
CNS.SNB_19       9.1764129  0.74760001
CNS.SNB_75      18.9683013  1.35386264
CNS.U251        10.5959557  0.08600140
CO.COLO205     -18.2547803 -1.33815283
CO.HCC_2998    -11.2583093 -1.41832111
CO.HCT_116      -7.4114929 -1.40279383
CO.HCT_15      -12.4369334 -1.44014400
CO.HT29        -11.0834586 -1.40053530
CO.KM12        -14.1522169 -1.33831497
CO.SW_620      -15.2704688 -1.37198891
LC.A549          2.7741392 -1.44514858
LC.EKVX          8.0876318 -1.19406561
LC.HOP_62        7.0317407 -1.29107330
LC.HOP_92        9.3687412 -1.21746487
LC.NCI_H226     14.0878383 -1.26458258
LC.NCI_H23       2.1586348 -1.13457629
LC.NCI_H322M     0.9642935 -1.39462046
LC.NCI_H460     -2.6425601 -0.62058595
LC.NCI_H522     -3.7315769 -0.01858513
LE.CCRF_CEM    -45.8393108  1.07748200
LE.HL_60       -39.9802504  1.06716727
LE.K_562       -36.8034528  1.06542122
LE.MOLT_4      -45.7033784  0.88193192
LE.RPMI_8226   -30.0365667  1.32704404
LE.SR          -22.0656489  0.48540031
ME.LOXIMVI       2.6593027  1.34181350
ME.M14           4.4120774  1.41103735
ME.MALME_3M      5.7364867  1.41198673
ME.MDA_MB_435    1.3734935  1.44341168
ME.MDA_N         1.4676775  1.42661945
ME.SK_MEL_2      2.8493981  1.41881236
ME.SK_MEL_28     6.8542425  1.40165394
ME.SK_MEL_5     -0.3345625  1.43279563
ME.UACC_257      1.4965664  1.42631272
ME.UACC_62       5.1942223  1.41023559
OV.IGROV1       -1.4380705 -1.35469739
OV.NCI_ADR_RES   2.8365119 -1.35971910
OV.OVCAR_3       0.1742243 -1.35462541
OV.OVCAR_4       3.7702336 -1.35981271
OV.OVCAR_5       3.6520668 -1.38160786
OV.OVCAR_8       4.0156442 -1.36427614
OV.SK_OV_3       6.5463751 -1.38890033
PR.DU_145        3.0912632 -1.38613964
PR.PC_3          1.4620803 -1.42946795
RE.786_0        10.1562184 -1.36286693
RE.A498         18.4036344 -1.38480035
RE.ACHN         14.0285403 -1.46180323
RE.CAKI_1        9.9135496 -1.40055299
RE.RXF_393      17.6653678 -1.41154038
RE.SN12C         9.5406281 -1.35752732
RE.TK_10         6.9353871 -1.37831516
RE.UO_31        14.1708157 -1.36950145
Comparision-Boot:
[[1]]
[[1]]$Pos
 [1] "BR.BT_549"     "BR.HS578T"     "BR.MDA_MB_231" "CNS.SF_268"   
 [5] "CNS.SF_295"    "CNS.SF_539"    "CNS.SNB_19"    "CNS.SNB_75"   
 [9] "CNS.U251"      "LC.EKVX"       "LC.HOP_62"     "LC.HOP_92"    
[13] "LC.NCI_H226"   "ME.M14"        "ME.MALME_3M"   "ME.SK_MEL_28" 
[17] "ME.UACC_62"    "OV.OVCAR_4"    "OV.OVCAR_5"    "OV.OVCAR_8"   
[21] "OV.SK_OV_3"    "PR.DU_145"     "RE.786_0"      "RE.A498"      
[25] "RE.ACHN"       "RE.CAKI_1"     "RE.RXF_393"    "RE.SN12C"     
[29] "RE.TK_10"      "RE.UO_31"     

[[1]]$Neg
 [1] "BR.MCF7"      "CO.COLO205"   "CO.HCC_2998"  "CO.HCT_116"   "CO.HCT_15"   
 [6] "CO.HT29"      "CO.KM12"      "CO.SW_620"    "LC.NCI_H522"  "LE.CCRF_CEM" 
[11] "LE.HL_60"     "LE.K_562"     "LE.MOLT_4"    "LE.RPMI_8226" "LE.SR"       


[[2]]
[[2]]$Pos
 [1] "BR.BT_549"     "BR.HS578T"     "BR.MDA_MB_231" "CNS.SF_268"   
 [5] "CNS.SF_295"    "CNS.SF_539"    "CNS.SNB_19"    "CNS.SNB_75"   
 [9] "CNS.U251"      "LC.EKVX"       "LC.HOP_62"     "LC.HOP_92"    
[13] "LC.NCI_H226"   "ME.M14"        "ME.MALME_3M"   "ME.SK_MEL_28" 
[17] "ME.UACC_62"    "OV.OVCAR_4"    "OV.OVCAR_5"    "OV.OVCAR_8"   
[21] "OV.SK_OV_3"    "PR.DU_145"     "RE.786_0"      "RE.A498"      
[25] "RE.ACHN"       "RE.CAKI_1"     "RE.RXF_393"    "RE.SN12C"     
[29] "RE.TK_10"      "RE.UO_31"     

[[2]]$Neg
 [1] "BR.MCF7"      "CO.COLO205"   "CO.HCC_2998"  "CO.HCT_116"   "CO.HCT_15"   
 [6] "CO.HT29"      "CO.KM12"      "CO.SW_620"    "LC.NCI_H522"  "LE.CCRF_CEM" 
[11] "LE.HL_60"     "LE.K_562"     "LE.MOLT_4"    "LE.RPMI_8226" "LE.SR"       


Stability-boot:
  1 - sum(SumNum)/sum(SumDenom)
1                     0.7479585
Representation Quality boot:
                    LI       LS
BR.MCF7       45.45354 66.01459
BR.MDA_MB_231 58.20550 76.50118
BR.HS578T     42.71187 59.30013
BR.BT_549     35.19679 60.61283
BR.T47D       16.59074 32.57961
CNS.SF_268    58.99390 74.16280
Inertia-Boot:
      Inertia-Mean Inertia-Sd        LI        LS
Dim 1    15.684001 0.19783923 15.293870 16.074131
Dim 2    11.605800 0.16275003 11.284864 11.926736
Dim 3     2.681200 0.07634981  2.530641  2.831758
Dim 4     2.552263 0.06679478  2.420547  2.683980
Dim 5     2.457455 0.05854789  2.342001  2.572909
Dim 6     2.384732 0.04503051  2.295934  2.473530

kimod documentation built on April 28, 2020, 9:21 p.m.