lipidr: Lipidomics Analysis Workflow in R

lipidr an easy-to-use R package implementing a complete workflow for downstream analysis of lipidomics data. lipidr parses results exported from Skyline directly into R, allowing integration into current analysis frameworks. lipidr allows data inspection, normalization, univariate and multivariate analysis, displaying informative visualizations. lipidr also implements a novel Lipid Set Enrichment Analysis (LSEA), harnessing molecular information such as lipid class, chain length and unsaturation.

Package details

AuthorAhmed Mohamed [cre] (<https://orcid.org/0000-0001-6507-5300>), Ahmed Mohamed [aut], Jeffrey Molendijk [aut]
Bioconductor views Lipidomics MassSpectrometry Normalization QualityControl Visualization
MaintainerAhmed Mohamed <[email protected]>
LicenseMIT + file LICENSE
Version1.0.0
URL https://github.com/ahmohamed/lipidr
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("lipidr")

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lipidr documentation built on May 6, 2019, 2:16 a.m.