Files in lipidr

Data Mining and Analysis of Lipidomics Datasets

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/lipidnames_pattern.rda

data/lipidDefaults.rda

data/data_normalized.rda

R/utils-workflow.R R/check_files.R R/mw.R R/bioc.R R/mva.R R/normalize.R R/de-analysis.R R/utils-df.R R/utils-misc.R R/lsea.R R/lipidr-package.R R/plot.R R/impute.R R/utils-pipe.R R/summarize.R R/manip.R R/readfiles.R R/annotation.R vignettes/workflow.Rmd man/LipidomicsExperiment.Rd man/add_sample_annotation.Rd man/normalize_pqn.Rd man/plot_trend.Rd man/mw.Rd man/lsea.Rd man/read_skyline.Rd man/use_interactive_graphics.Rd man/lipidr-package.Rd man/summarize_transitions.Rd man/lipidDefaults.Rd man/plot_heatmap.Rd man/pipe.Rd man/impute_na.Rd man/LipidomicsExperiment-class.Rd man/plot_samples.Rd man/plot_molecules.Rd man/non_parsed_molecules.Rd man/filter_by_cv.Rd man/annotate_lipids.Rd man/de_analysis.Rd man/set_attr.Rd man/as_lipidomics_experiment.Rd man/mva.Rd man/remove_non_parsed_molecules.Rd man/plot_chain_distribution.Rd man/lipidnames_pattern.Rd man/gen_lipidsets.Rd man/update_molecule_names.Rd man/normalize_istd.Rd man/plot_lipidclass.Rd man/lipidr-data.Rd man/data_normalized.Rd

man/figures/workflow.png

man/figures/num_matrix.png

man/figures/logo.png

man/figures/skyline_export.png

tests/testthat.R tests/spelling.R

tests/testthat/F2.csv

tests/testthat/test-normalize.R tests/testthat/test-lsea.R tests/testthat/test-readfiles-sample_annot.R tests/testthat/test-workflow.R

tests/testthat/A1_pivot.csv

tests/testthat/test-fromdf.R tests/testthat/test-summarize.R tests/testthat/test-readfiles.R tests/testthat/test-readfiles-num_matrix.R tests/testthat/test-mw.R tests/testthat/helper-lipidex.R tests/testthat/test-manip.R

tests/testthat/A1.csv

tests/testthat/test-annotation.R tests/testthat/test-impute.R

inst/WORDLIST

inst/doc/workflow.Rmd

inst/doc/workflow.html

inst/doc/workflow.R

inst/extdata/brca_clin.csv

inst/extdata/F2_data.csv

inst/extdata/A1_data.csv

inst/extdata/brca_matrix.csv

inst/extdata/clin.csv

inst/extdata/F1_data.csv

lipidr documentation built on Nov. 8, 2020, 7:50 p.m.