Description Usage Arguments Value Examples
Calculate a single intensity for molecules with multiple transitions, by determining the average or maximum intensity.
1 | summarize_transitions(data, method = c("max", "average"))
|
data |
LipidomicsExperiment object. |
method |
Choose to summarize multiple transitions by taking the average
or maximum intensity. Default is |
A LipidomicsExperiment object with single intensities per lipid molecule
1 2 3 4 5 6 | datadir <- system.file("extdata", package = "lipidr")
filelist <- list.files(datadir, "data.csv", full.names = TRUE)
d <- read_skyline(filelist)
clinical_file <- system.file("extdata", "clin.csv", package = "lipidr")
d <- add_sample_annotation(d, clinical_file)
d_summarized <- summarize_transitions(d, method = "average")
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