mw: Metabolomics Workbench integration

Description Usage Arguments Value Functions Examples

Description

These functions use Metabolomics Workbench REST API to support data mining of publicly available lipidomics datasets.

Usage

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list_mw_studies(keyword = "lipid")

fetch_mw_study(study_id)

read_mwTab(mwTab)

read_mw_datamatrix(file)

Arguments

keyword

A keyword to search for in Metabolomics Workbench studies.

study_id

The Metabolomics Workbench study ID.

mwTab

File path or url for a mwTab file.

file

File path or url for the file containing the data matrix.

Value

list_mw_studies returns a data frame with studies matching the keyword. Study ID, title, author and details are retrieved.

All other functions return a LipidomicsExperiment object containing clinical and lipid intensity data.

Functions

Examples

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## Not run: 
list_mw_studies()

## End(Not run)
## Not run: 
fetch_mw_study("ST001111")

## End(Not run)

lipidr documentation built on Nov. 8, 2020, 7:50 p.m.