LipidomicsExperiment: Constructor for Lipidomics experiment from list of assays
In lipidr: Data Mining and Analysis of Lipidomics Datasets
Description
Usage
Arguments
Value
Description
Constructor for Lipidomics experiment from list of assays
Usage
1
LipidomicsExperiment(assay_list, metadata, colData = NULL, rowData = NULL)
Arguments
assay_list
A list or SimpleList of matrix-like elements,
or a matrix-like object. Passed to SummarizedExperiment().
metadata
A list containing arbitrary information about the experiment.
It should at least contain 2 elements:
dimnames 2-element character vector with dimension names
summarized Has transitions been summarized?
colData
An optional DataFrame describing the samples (contains
clinical information). Row names, if present, become the column names of
the LipidomicsExperiment.
rowData
A DataFrame object describing the rows (contains generated
lipid annotations). Row names, if present, become the row names of the
SummarizedExperiment object. The number of rows of the DataFrame
must be equal to the number of rows of the matrices in assays.
Value
LipidomicsExperiment object
lipidr documentation built on Nov. 8, 2020, 7:50 p.m.
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Description Usage Arguments Value
Description
Constructor for Lipidomics experiment from list of assays
Usage
1 | LipidomicsExperiment(assay_list, metadata, colData = NULL, rowData = NULL)
|
Arguments
assay_list |
A list or SimpleList of matrix-like elements,
or a matrix-like object. Passed to |
metadata |
A list containing arbitrary information about the experiment. It should at least contain 2 elements:
|
colData |
An optional DataFrame describing the samples (contains clinical information). Row names, if present, become the column names of the LipidomicsExperiment. |
rowData |
A DataFrame object describing the rows (contains generated lipid annotations). Row names, if present, become the row names of the SummarizedExperiment object. The number of rows of the DataFrame must be equal to the number of rows of the matrices in assays. |
Value
LipidomicsExperiment object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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