API for lipidr
Data Mining and Analysis of Lipidomics Datasets
| Global functions | |
|---|---|
| %>% | Man page |
| .LipidomicsExperiment | Man page |
| .as_regex | Source code |
| .check_duplicate_mols | Source code |
| .check_lipids_molecules | Source code |
| .check_log | Source code |
| .check_sample_annotation | Source code |
| .check_skyline | Source code |
| .check_tabular | Source code |
| .clean_molecule_name | Source code |
| .col_exists | Source code |
| .copy_attr | Source code |
| .cv | Source code |
| .data_internal | Source code |
| .display_plot | Source code |
| .get_loading_matrix | Source code |
| .get_mds_matrix | Source code |
| .get_mol_dim | Source code |
| .gsea_fun | Source code |
| .have_lipids_molecules | Source code |
| .is_blank | Source code |
| .is_num_matrix | Source code |
| .is_pivoted | Source code |
| .is_sample_annotation | Source code |
| .is_skyline | Source code |
| .is_tabular | Source code |
| .join_wrapper | Source code |
| .log_data | Source code |
| .msdata_from_mw_analysis | Source code |
| .mw_analysis_lists | Source code |
| .onAttach | Source code |
| .parse_lipid_info | Source code |
| .parse_mw_analysis | Source code |
| .plot_class_boxplot | Source code |
| .plot_class_sd | Source code |
| .plot_molecule_boxplot | Source code |
| .plot_molecule_cv | Source code |
| .plot_molecule_sd | Source code |
| .plot_sample_boxplot | Source code |
| .plot_sample_tic | Source code |
| .prenormalize_check | Source code |
| .process_prcomp | Source code |
| .quos_syms | Source code |
| .read_not_pivoted | Source code |
| .read_pivoted | Source code |
| .read_skyline_file | Source code |
| .read_tabular | Source code |
| .replace_na_rowmean | Source code |
| .sampledata_from_mw_analysis | Source code |
| .silent | Source code |
| .to_summarized_experiment | Source code |
| .uniform_attrs | Source code |
| .unnest_key_value | Source code |
| LipidomicsExperiment | Man page Source code |
| LipidomicsExperiment-class | Man page |
| add_sample_annotation | Man page Source code |
| annotate_lipids | Man page Source code |
| as_lipidomics_experiment | Man page Source code |
| data_normalized | Man page |
| de_analysis | Man page Source code |
| de_design | Man page Source code |
| fetch_mw_study | Man page Source code |
| filter_by_cv | Man page Source code |
| fix_all_na | Source code |
| gen_lipidsets | Man page Source code |
| get_group_vector_opls | Source code |
| gg_circle | Source code |
| impute_na | Man page Source code |
| is_logged | Man page Source code |
| is_normalized | Man page Source code |
| is_summarized | Man page Source code |
| laply | Source code |
| lipidDefaults | Man page |
| lipidnames_pattern | Man page |
| lipidr | Man page |
| lipidr-data | Man page |
| lipidr-package | Man page |
| list_mw_studies | Man page Source code |
| lsea | Man page Source code |
| mva | Man page Source code |
| non_parsed_molecules | Man page Source code |
| normalize_istd | Man page Source code |
| normalize_pqn | Man page Source code |
| plot_chain_distribution | Man page Source code |
| plot_class_enrichment | Man page Source code |
| plot_enrichment | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_lipidclass | Man page Source code |
| plot_molecules | Man page Source code |
| plot_mva | Man page Source code |
| plot_mva_loadings | Man page Source code |
| plot_results_volcano | Man page Source code |
| plot_ropls_results | Source code |
| plot_samples | Man page Source code |
| plot_trend | Man page Source code |
| read_mwTab | Man page Source code |
| read_mw_datamatrix | Man page Source code |
| read_skyline | Man page Source code |
| remove_non_parsed_molecules | Man page Source code |
| rownames_to_column | Source code |
| run_opls | Source code |
| run_pca | Source code |
| set_logged | Man page Source code |
| set_normalized | Man page Source code |
| set_summarized | Man page Source code |
| significant_lipidsets | Man page Source code |
| significant_molecules | Man page Source code |
| summarize_transitions | Man page Source code |
| toDataFrame | Source code |
| to_df | Source code |
| to_long_format | Source code |
| to_named_list | Source code |
| to_num_matrix | Source code |
| to_rownames_ | Source code |
| top_lipids | Man page Source code |
| update_molecule_names | Man page Source code |
| use_interactive_graphics | Man page Source code |
