Man pages for mQTL.NMR
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
| align_mQTL | Peak alignment and normalisation of metabolomic data |
| alignSp | Base function for Spectrum Alignment |
| attachSegments | Concatenation of test and reference segments |
| circle_mQTL | Circular genome-metabolome plot for mQTL.NMR |
| configureRSPA | segmentaion and recursive alignment parameters |
| format_mGWA | Routine to reformat the data into the required format to... |
| format_mQTL | Routine to reformat the data of animal crosses into the... |
| load_datafiles | Load data files for examples |
| load_demo_data | Load demo data files |
| matchSegments | Matching the segment of interest to the corresponding... |
| mQTL.NMR-package | Metabolomic Quantitative Trait Locus mapping for 1H NMR data |
| normalise | Base function of normalisation |
| normalise_mQTL | Normalisation of metabolomic data |
| peakPeaks | Peak picking algorithm |
| post_mQTL | Plot top LOD results |
| ppersp | Plot a 3-D profile of LODs |
| pplot | Plot a color scale layer |
| pre_mQTL | Statistical Recoupling of variables for mQTL analysis |
| process_mGWA | Metabolomic Genome-Wide Association analysis for a set of... |
| process_mQTL | mQTL mapping |
| segmentateSp | Segmentation of a spectrum of interest |
| selectRefSp | Automated selection of a reference spectrum |
| setupRSPA | setup of alignment parameters |
| sgolay | Find the matrix of differentiation filters |
| sgolayDeriv | Calculate smoothed derivates |
| simple.plot | Plot NMR profile plus SRV regions |
| SRV | Statistical Recoupling of Variables |
| SRV_lod.plot | Plot top lod SRV clusters |
| SRV.plot | Plot SRV clusters |
| summary_mQTL | Function to summarize the mQTL mapping results of all the... |
| Top_SRV.plot | Plot top SRV clusters |
