summary_mQTL: Function to summarize the mQTL mapping results of all the...

In mQTL.NMR: Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Description

This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.

Usage

summary_mQTL(results, redfile,Th = 5)

Arguments

results	a list sepcifying the mQTL mapping results
redfile	a text file containing the parameters of identified clusters(.PPM file)
Th	a numerical paramater indicating the threshold of top accepted score (LOD or -log10(p-value))

Details

Generates a text file containing a table of summary of mQTL mapping results

Value

returns Summaries

Author(s)

Jean-Baptiste Cazier and Lyamine Hedjazi

See Also

pre_mQTL

Examples

    load_datafiles()
    load(results)

    Th<-10 ## LOD threshold
    summary_mQTL(results,rectangle_SRV,Th)## summarizes mQTL results in a table

mQTL.NMR documentation built on Nov. 1, 2018, 2:13 a.m.