Top_SRV.plot: Plot top SRV clusters

Description Usage Arguments Author(s) See Also Examples

View source: R/Top_SRV.plot.R

Description

Plot lines defined by SRV on top SRV clusters

Usage

1
Top_SRV.plot(file1,file2,results,met,intMeth,clustidx)

Arguments

file1

a text file with NMR data

file2

a text file with SRV clusters

results

a list containinig results of mQTL mapping

met

a character specifying the summarizing statistical measure of peaks

intMeth

a charcter specifying summarizing method across samples ("mean" or "max")

clustidx

index specifying the SRV cluser of interest (optinal)

Author(s)

Lyamine Hedjazi

See Also

SRV.plot

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
load_datafiles()

load(results)

# Format data

format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)

## Plot SRV profile
Top_SRV.plot(file1=cleandat,file2=rectangle_SRV,results=results,met=met,intMeth="mean")

mQTL.NMR documentation built on Nov. 1, 2018, 2:13 a.m.