compute_sample_scores: Compute sample scores for each pathway
In mdp: Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls

Compute sample scores for each pathway

1 2	compute_sample_scores(zscore, perturbed_genes, control_samples, test_samples, pathways, pdata)

`zscore`	zscore data frame
`perturbed_genes`	list of pertured genes
`control_samples`	vector of control sample names
`test_samples`	vector of test sample names
`pathways`	list of pathways
`pdata`	phenotypic data with Sample and Class columns

data frame of sample scores

mdp documentation built on Nov. 8, 2020, 7:51 p.m.

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