compute_gene_score: Compute gene score Computes gene scores for each gene within...

In mdp: Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls

Description

Compute gene score Computes gene scores for each gene within each class and perturbation freq

Usage

compute_gene_score(zscore, pdata, control_lab,
  score_type = c("gene_score", "gene_freq"))

Arguments

zscore	zscore data frame
pdata	phenotypic data with Class and Sample columns
control_lab	character specifying control class
score_type	set to 'gene_score' or 'gene_freq' to compute gene scores or frequencies

Value

data frame of gene scores or gene frequencies

mdp documentation built on Nov. 8, 2020, 7:51 p.m.