pathway_summary: print pathways generates a summary plot for pathways and...

In mdp: Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls

Description

print pathways generates a summary plot for pathways and sample score plot of best gene set

Usage

pathway_summary(sample_results, path, file_name, control_samples,
  control_lab)

Arguments

sample_results	list of sample scores for each geneset
path	directory to save images
file_name	name of saved imaged
control_samples	list of control sample names
control_lab	label that specifies control class

Value

data frame of signal to noise ratio of control vc test sample scores for each pathway

mdp documentation built on Nov. 8, 2020, 7:51 p.m.