sample_plot: Plot sample scores Plots the sample scores data.frame for a...

In mdp: Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls

Description

Plot sample scores Plots the sample scores data.frame for a given geneset. Data frame must have Score, Sample and Class columns

Usage

sample_plot(sample_data, filename = "", directory = "", title = "",
  print = TRUE, display = TRUE, control_lab)

Arguments

sample_data	data frame of sample score information for a geneset. Must have columns 'Sample', 'Score' and 'Class'
filename	(optional) character string that will be added to the saved pdf filename
directory	(optional) character string of directory to save file
title	(optional) character string of title name for graph
print	(default TRUE) Save as a pdf file
display	(default TRUE) Display plot
control_lab	(optional) character string Specifying control_lab will set the control class as light blue as a default

Value

generates a plot of the sample scores

Examples

sample_plot(sample_data = sample_data, control_lab = 'baseline')

Example output

mdp documentation built on Nov. 8, 2020, 7:51 p.m.