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Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.
Package details |
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Author | Anand Mayakonda [aut, cre] (<https://orcid.org/0000-0003-1162-687X>), Reka Toth [aut] (<https://orcid.org/0000-0002-6096-1052>), Rajbir Batra [ctb], Clarissa Feuerstein-Akgöz [ctb], Joschka Hey [ctb], Maximilian Schönung [ctb], Pavlo Lutsik [ctb] |
Bioconductor views | Coverage DNAMethylation Sequencing |
Maintainer | Anand Mayakonda <anand_mt@hotmail.com> |
License | MIT + file LICENSE |
Version | 1.4.07 |
URL | https://github.com/CompEpigen/methrix |
Package repository | View on Bioconductor |
Installation |
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