region_filter: Filter matrices by region
In methrix: Fast and efficient summarization of generic bedGraph files from Bisufite sequencing

Filter matrices by region

1	region_filter(m, regions, type = "within")

`m`	`methrix` object
`regions`	genomic regions to filter-out. Could be a data.table with 3 columns (chr, start, end) or a `GenomicRanges` object
`type`	defines the type of the overlap of the CpG sites with the target regions. Default value is 'within'. For detailed description, see the `foverlaps` function of the `data.table` package.

Takes methrix object and filters CpGs based on supplied regions in data.table or GRanges format

An object of class methrix

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data('methrix_data')
region_filter(m = methrix_data,
regions = data.table(chr = 'chr21', start = 27867971, end =  27868103))

methrix documentation built on Feb. 13, 2021, 2 a.m.

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