extract_CPGs: Extracts all CpGs from a genome
In methrix: Fast and efficient summarization of generic bedGraph files from Bisufite sequencing
Description
Usage
Arguments
Value
Examples
Description
Extracts all CpGs from a genome
Usage
1
extract_CPGs(ref_genome = NULL)
Arguments
ref_genome
BSgenome object or name of the installed BSgenome package. Example: BSgenome.Hsapiens.UCSC.hg19
Value
a list of data.table containing number of CpG's and contig lengths
Examples
1
2
3
4
## Not run:
hg19_cpgs = methrix::extract_CPGs(ref_genome = 'BSgenome.Hsapiens.UCSC.hg19')
## End(Not run)
methrix documentation built on Feb. 13, 2021, 2 a.m.
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Description Usage Arguments Value Examples
Description
Extracts all CpGs from a genome
Usage
1 | extract_CPGs(ref_genome = NULL)
|
Arguments
ref_genome |
BSgenome object or name of the installed BSgenome package. Example: BSgenome.Hsapiens.UCSC.hg19 |
Value
a list of data.table containing number of CpG's and contig lengths
Examples
1 2 3 4 | ## Not run:
hg19_cpgs = methrix::extract_CPGs(ref_genome = 'BSgenome.Hsapiens.UCSC.hg19')
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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