methrix: Fast and efficient summarization of generic bedGraph files from Bisufite sequencing

Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.

Package details

AuthorAnand Mayakonda [aut, cre], Reka Toth [aut], Maximilian Schönung [ctb], Pavlo Lutsik [ctb], Joschka Hey [ctb]
Bioconductor views Coverage DNAMethylation Sequencing
MaintainerAnand Mayakonda <[email protected]>
LicenseMIT + file LICENSE
Version1.0.05
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("methrix")

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methrix documentation built on Jan. 10, 2020, 2 a.m.