Files in methrix
Fast and efficient summarization of generic bedGraph files from Bisufite sequencing

NEWS
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/methrix_plot.R R/snp_removal.R R/read_bedgraphs.R R/accessory_funcs_2.R R/check_bins.R R/write_bigwigs.R R/extract_CpGs.R R/methrix_object.R R/methrix_data.R R/write_bedgraphs.R R/methrix_operations.R R/methrix_report.R R/accessory_funcs.R
inst/CITATION
inst/doc/methrix.R inst/doc/methrix.Rmd
inst/doc/methrix.html
inst/extdata/C2.bedGraph.gz
inst/extdata/N2.bedGraph.gz
inst/extdata/bdg2bw.sh
inst/extdata/C1.bedGraph.gz
inst/extdata/N1.bedGraph.gz
inst/report/custom.css
inst/report/logo_large_hexagon.gif
inst/report/summarize_methrix.Rmd inst/script/data_generation.R
build/vignette.rds
tests/testthat.R tests/testthat/test-coverage_filter.R tests/testthat/test-get_region_summary.R tests/testthat/test-get_matrix.R tests/testthat/test-converting.R tests/testthat/test-remove_uncovered.R tests/testthat/test-combine_methrix.R tests/testthat/test-region_filter.R tests/testthat/test-subset_methrix.R tests/testthat/test-extract_CPGs.R tests/testthat/test-mask_methrix.R
vignettes/overview.png
vignettes/methrix.Rmd
vignettes/logo_large_hexagon.gif
data/methrix_data.rda
man/plot_stats.Rd man/methrix_report.Rd man/load_HDF5_methrix.Rd man/convert_methrix.Rd man/get_region_summary.Rd man/write_bigwigs.Rd man/save_HDF5_methrix.Rd man/get_stats.Rd man/plot_pca.Rd man/coverage_filter.Rd man/methrix_pca.Rd man/methrix_data.Rd man/convert_HDF5_methrix.Rd man/subset_methrix.Rd man/region_filter.Rd man/remove_snps.Rd man/plot_density.Rd man/remove_uncovered.Rd man/write_bedgraphs.Rd man/combine_methrix.Rd man/get_matrix.Rd man/plot_coverage.Rd man/read_bedgraphs.Rd man/extract_CPGs.Rd man/methrix2bsseq.Rd man/mask_methrix.Rd man/order_by_sd.Rd man/methrix-class.Rd man/plot_violin.Rd
methrix documentation built on Feb. 13, 2021, 2 a.m.