API for methyAnalysis
DNA methylation data analysis and visualization
| Global functions | |
|---|---|
| .estimateTrackHeight | Source code |
| .estimateTxOrder | Source code |
| .identifySigProbe | Source code |
| .setupSlidingTests | Source code |
| MethyGenoSet | Man page Source code |
| MethyGenoSet-class | Man page |
| MethyLumiM2GenoSet | Man page Source code |
| [,MethyGenoSet,ANY,ANY,ANY-method | Man page |
| [,MethyGenoSet-method | Man page |
| annotateDMRInfo | Man page Source code |
| annotateGRanges | Man page Source code |
| asBigMatrix | Man page |
| asBigMatrix,GenoSet-method | Man page |
| asBigMatrix-methods | Man page |
| buildAnnotationTracks | Man page Source code |
| checkChrName | Man page Source code |
| class:MethyGenoSet | Man page |
| coerce,GenoSet,MethyGenoSet-method | Man page |
| coerce,MethyGenoSet,MethyLumiM-method | Man page |
| coerce,MethyLumiM,MethyGenoSet-method | Man page |
| combine,MethyGenoSet,MethyGenoSet-method | Man page |
| createTranscriptTrack | Man page Source code |
| detectDMR.slideWin | Man page Source code |
| detection,MethyGenoSet-method | Man page |
| detection<-,MethyGenoSet,ANY-method | Man page |
| detection<-,MethyGenoSet-method | Man page |
| estimateCMR.methylation | Man page Source code |
| estimateMethySeq | Man page Source code |
| exampleMethyGenoSet | Man page |
| export.DMRInfo | Man page Source code |
| export.methyGenoSet | Man page Source code |
| exprs,MethyGenoSet-method | Man page |
| exprs<-,MethyGenoSet,ANY-method | Man page |
| exprs<-,MethyGenoSet-method | Man page |
| filterBisulfiteVariant | Man page Source code |
| getContinuousRegion | Man page Source code |
| getCoverage | Man page Source code |
| getCpGIsland.ucsc | Source code |
| getCytoBand.ucsc | Source code |
| getEntrezAnnotation | Source code |
| getHistory,MethyGenoSet-method | Man page |
| getMethyProbeLocation | Source code |
| heatmapByChromosome | Man page Source code |
| identifyCpG | Man page Source code |
| identifySigDMR | Man page Source code |
| initialize,MethyGenoSet-method | Man page |
| methylated,MethyGenoSet-method | Man page |
| methylated<-,MethyGenoSet,ANY-method | Man page |
| methylated<-,MethyGenoSet-method | Man page |
| plotHeatmapByGene | Man page Source code |
| plotMethylationHeatmapByGene | Man page Source code |
| plotTracksWithDataTrackInfo | Man page Source code |
| probe2gene | Source code |
| smoothMethyData | Man page Source code |
| transcriptDb2GeneRegionTrackByGene | Source code |
| unmethylated,MethyGenoSet-method | Man page |
| unmethylated<-,MethyGenoSet,ANY-method | Man page |
| unmethylated<-,MethyGenoSet-method | Man page |
| updateMethyGenoSet | Man page Source code |
