MethyLumiM2GenoSet: Coerce objects of MethyLumiM-class to MethyGenoSet
In methyAnalysis: DNA methylation data analysis and visualization

Description Usage Arguments Value Author(s) See Also Examples

Coerce objects of MethyLumiM-class to MethyGenoSet

1	MethyLumiM2GenoSet(methyLumiM, lib = "FDb.InfiniumMethylation.hg19", bigMatrix=FALSE, dir.bigMatrix='.', savePrefix.bigMatrix)

`methyLumiM`	a MethyLumiM object
`lib`	lib is a annotation library
`bigMatrix`	whether to save the data as BigMatrix (designed for very large dataset)
`dir.bigMatrix`	the parent directory to save the BigMatrix data files
`savePrefix.bigMatrix`	the folder name prefix of the directory to save the BigMatrix data files. The fold name will be like this: paste(savePrefix.bigMatrix, '_bigmat', sep=”)

a MethyGenoSet object

Pan Du

MethyGenoSet

if (require(FDb.InfiniumMethylation.hg19)) {
	data(exampleMethyGenoSet)
	## set as MethyLumiM object
	methyLumiM <- as(exampleMethyGenoSet, 'MethyLumiM')
	## set back as MethyGenoSet object
	methyGenoSet <- MethyLumiM2GenoSet(methyLumiM, lib = "FDb.InfiniumMethylation.hg19")
	class(methyGenoSet)
}