export.DMRInfo: Output the DMR (Differentially Methylated Region) data...
In methyAnalysis: DNA methylation data analysis and visualization

Description Usage Arguments Details Value Author(s) See Also Examples

Output the DMR (Differentially Methylated Region) data information

1	export.DMRInfo(DMRInfo.ann, methyData = NULL, savePrefix = "")

`DMRInfo.ann`	The annotated DMR information outputted by annotateDMRInfo.
`methyData`	Methylation data information in MethyGenoSet or MethyLumiM class
`savePrefix`	The prefix added to the output file names.

This function basically save the annotated DMR information as text .csv files.

results files.

Pan Du

annotateDMRInfo

	data(exampleMethyGenoSet)
	
	sampleType <- colData(exampleMethyGenoSet)$SampleType
	
	## Do differential test
	allResult <- detectDMR.slideWin(exampleMethyGenoSet, sampleType=sampleType, testMethod='ttest')

	## Identify the DMR (Differentially Methylated Region) by setting proper parameters.
	## Here we just use default ones
	allDMRInfo <- identifySigDMR(allResult)

	## Annotate significant DMR info
	if (require(TxDb.Hsapiens.UCSC.hg19.knownGene)) {
		DMRInfo.ann <- annotateDMRInfo(allDMRInfo, 'TxDb.Hsapiens.UCSC.hg19.knownGene')
		export.DMRInfo(DMRInfo.ann, savePrefix='testExample')
	}