getCoverage: get the coverage based on a given GRanges object
In methyAnalysis: DNA methylation data analysis and visualization
Description
Usage
Arguments
Value
Author(s)
Description
calculate the average coverage on each element of a given GRanges object
Usage
1
getCoverage(grange, coverage, startOnly = FALSE, as.GRanges = FALSE)
Arguments
grange
GRanges object specify the genome locations to get coverage
coverage
the genome coverage (a RleList object) output by NGS pipeline
startOnly
whether to calculate the coverage based on the start location or the average of the entire GRanges element
as.GRanges
whether return a GRanges object or a vector of coverage
Value
a vector of coverage or a GRanges object (as.GRanges is TRUE)
Author(s)
Pan Du
methyAnalysis documentation built on Nov. 8, 2020, 8:09 p.m.
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Description Usage Arguments Value Author(s)
Description
calculate the average coverage on each element of a given GRanges object
Usage
1 | getCoverage(grange, coverage, startOnly = FALSE, as.GRanges = FALSE)
|
Arguments
grange |
GRanges object specify the genome locations to get coverage |
coverage |
the genome coverage (a RleList object) output by NGS pipeline |
startOnly |
whether to calculate the coverage based on the start location or the average of the entire GRanges element |
as.GRanges |
whether return a GRanges object or a vector of coverage |
Value
a vector of coverage or a GRanges object (as.GRanges is TRUE)
Author(s)
Pan Du
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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