createTranscriptTrack: Create a transcript annotation track
In methyAnalysis: DNA methylation data analysis and visualization

Description Usage Arguments Details Value Author(s) See Also Examples

Create a transcript track, which is a GeneRegionTrack object

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createTranscriptTrack(gene, genomicFeature = "TxDb.Hsapiens.UCSC.hg19.knownGene", lib = "org.Hs.eg.db", 
	genome = "hg19", extendRange = c(2000, 2000), includeOtherGene=FALSE, includeGeneBody = TRUE, 
	thinBox_utrOnly = FALSE, background.title = "gray", fill = "#8282d2", ...)

`gene`	An Entrez gene ID or a GRanges object with length equals one
`genomicFeature`	a TxDb library, TxDb object, or Mart object
`lib`	Entrez annotation library
`genome`	The version of genome
`extendRange`	extended range on each side of the gene
`includeOtherGene`	whether to include other genes in the same chromosome ranges, only useful when "gene" is a gene ID.
`includeGeneBody`	whether to include the whole gene body or not
`thinBox_utrOnly`	whether to only show UTRs as thin boxs in the plot
`background.title`	the background color of the title
`fill`	fill color for transcript track
`...`	other parameters

This function is to create a GeneRegionTrack object for visualization using Gviz package.

a GeneRegionTrack object

Pan Du

plotTracks, plotTracksWithDataTrackInfo, heatmapByChromosome, plotMethylationHeatmapByGene

if (require(TxDb.Hsapiens.UCSC.hg19.knownGene) && require(Gviz)) {
	rangeTrack <- createTranscriptTrack('7157', genomicFeature = "TxDb.Hsapiens.UCSC.hg19.knownGene")
	# plotTracks(rangeTrack)
}