MnM-package: MeDIP-Seq and MRE-Seq data analysis
In methylMnM: detect different methylation level (DMR)

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M&M was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-Seq) and the digestions with the methyl-sensitive restriction enzymes (MRE-Seq). Nevertheless, functionalities like the quality controls may be applied to other types of sequencing data (e.g. ChIP-Seq). MeDIP-MRE (methylMnM) test which combine the two differential techniques (MeDIP-seq and MRE-seq) data to detecting the differentially methylation level of CpG.