calculatecountneg: Call C programs to R.

In methylMnM: detect different methylation level (DMR)

Description

Call C programs to R for calculate MRE-seq "-" direction count of each bin.

Usage

calculatecountneg(data2, data3, cpg2, cpg3, datalength, cpglength, 
count=rep(0,cpglength))

Arguments

data2	Start position of each tag.
data3	End position of each tag.
cpg2	Start position of each bin.
cpg3	End position of each bin.
datalength	The number of tags
cpglength	The number of bins
count	Count of MRE-seq "-" direction of each bin.

Value

Count of MRE-seq "-" direction of each bin.

Author(s)

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Examples

  data<-matrix( 1:400, nrow=200 )
  cpg<-matrix( 1:40, nrow=20)
  cpg[,1]<-seq(0,380,length=20)
  cpg[,2]<-seq(20,400,length=20)
  f <-calculatecountneg(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]),
 length(cpg[,2]), count=rep(0,length(cpg[,2])))

methylMnM documentation built on Nov. 8, 2020, 6:47 p.m.