pmultinom: Call C programs to R.

In methylMnM: detect different methylation level (DMR)

Description

Call C programs to R for calculate p-value of each bin with multinomial distribution.

Usage

pmultinom(T, SIZE,length, P1, P2, P3, P4, C1, C2,
 pvalue=rep(0,length(T)))

Arguments

T	Statistic.
SIZE	The sum of MeDIP-seq count and MRE-seq count of each bin of two samples.
length	The number of bins.
P1	The probability of MeDIP-seq of sample 1 in multinomial distribution.
P2	The probability of MeDIP-seq of sample 2 in multinomial distribution.
P3	The probability of MRE-seq of sample 1 in multinomial distribution.
P4	The probability of MRE-seq of sample 2 in multinomial distribution.
C1	A constant to balance MeDIP-seq of sample 1 and sample 2.
C2	A constant to balance MRE-seq of sample 1 and sample 2.
pvalue	p-values of windows.

Value

p-value.

Author(s)

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Examples

T<-4
SIZE<-200
p<-c(0.25,0.25,0.25,0.25)
c1<-1
c2<-1
length<-1
f<-pmultinom(T, SIZE,length, p[1], p[2], p[3], p[4], c1,
 c2, pvalue=rep(0,length(T)))

methylMnM documentation built on Nov. 8, 2020, 6:47 p.m.