Man pages for mgsa
Model-based gene set analysis
| alphaMcmcPost-methods | posterior estimates of the parameter alpha for each MCMC run |
| alphaPost-methods | Posterior for alpha |
| betaMcmcPost-methods | posterior estimates of the parameter beta for each MCMC run |
| betaPost-methods | Posterior for beta |
| createMgsaGoSets | This functions takes a 1:1 mapping of go.ids to items and... |
| example-go | Example GO sets for mgsa |
| example-o | Example objects for mgsa |
| itemAnnotations-methods | Item annotations of a MgsaSets |
| itemIndices-methods | Item indices of a MgsaSets |
| length-methods | Length of a MgsaSets. |
| MgsaGoSets-class | Gene Ontology annotations |
| MgsaMcmcResults-class | Instances of this class are used to hold the additional... |
| mgsa-methods | Performs an MGSA analysis |
| mgsa-package | Model-based gene set analysis |
| MgsaResults-class | Results of an MGSA analysis |
| MgsaSets-class | Sets of items and their annotations |
| nsamples-methods | How many samples per MCMC run collected |
| plot-MgsaResults-method | Plot method for MgsaResults objects |
| pMcmcPost-methods | posterior estimates of the parameter p for each MCMC run |
| populationSize-methods | Size of the population of a MgsaResults |
| pPost-methods | Posterior for beta |
| readGAF | Read a Gene Ontology annotation file |
| restarts-methods | How many MCMC runs |
| setAnnotations-methods | Set annotations of a MgsaSets |
| setsMcmcPost-methods | posterior estimates of the the set marginal probabilities for... |
| setsResults-methods | Posterior for each set |
| show-MgsaResults-method | Show an MgsaResults |
| show-MgsaSets-method | Show an MgsaSets |
| steps-methods | How many steps per MCMC run |
| studySetSizeInPopulation-methods | Size of the study set of a MgsaResults |
| subMgsaSets-methods | Subset of an MgsaSets |
