MgsaResults-class: Results of an MGSA analysis
In mgsa: Model-based gene set analysis
Description
The results of an MGSA analysis.
Slots
populationSizeThe number of items in the population.
studySetSizeInPopulationThe number of items both in the study set and in the population.
alphaPostwith columns value, estimate and std.error.
betaPostwith columns value, estimate and std.error.
pPostwith columns value, estimate and std.error.
setsResultswith columns inPopulation, inStudySet, estimate and std.error.
The columns of the slots alphaPost, betaPost, and pPost contains a realization value, its posterior estimate and standard error for the parameters alpha, beta and p respectively.
The columns of the slot setsResults contains the number of items of the set in the population, the number of items of the set in the study set, the estimate of its marginal posterior probability and its standard error.
The rownames are the names of the sets if available.
Because an MgsaResults is the outcome of an MGSA analysis (see mgsa), accessors but no replacement methods exist for each slot.
See Also
mgsa documentation built on Nov. 8, 2020, 7:54 p.m.
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Description
The results of an MGSA analysis.
Slots
populationSizeThe number of items in the population.
studySetSizeInPopulationThe number of items both in the study set and in the population.
alphaPostwith columns
value,estimateandstd.error.betaPostwith columns
value,estimateandstd.error.pPostwith columns
value,estimateandstd.error.setsResultswith columns
inPopulation,inStudySet,estimateandstd.error.The columns of the slots
alphaPost,betaPost, andpPostcontains a realization value, its posterior estimate and standard error for the parameters alpha, beta and p respectively.The columns of the slot
setsResultscontains the number of items of the set in the population, the number of items of the set in the study set, the estimate of its marginal posterior probability and its standard error. Therownamesare the names of the sets if available.Because an
MgsaResultsis the outcome of an MGSA analysis (seemgsa), accessors but no replacement methods exist for each slot.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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