Description Usage Arguments Value Examples
Plot abundance density across samples for a given taxon.
1 2 3 4 5 6 7 8 9 10 11 12 |
x |
|
variable |
OTU or metadata variable to visualize |
log10 |
Logical. Show log10 abundances or not. |
adjust |
see stat_density |
kernel |
see stat_density |
trim |
see stat_density |
na.rm |
see stat_density |
fill |
Fill color |
tipping.point |
Optional. Indicate critical point for abundance variations to be highlighted. |
xlim |
X axis limits |
A ggplot
plot object.
1 2 3 4 5 6 7 8 9 | # Load gut microbiota data on 1006 western adults
# (see help(atlas1006) for references and details)
data(dietswap)
# Use compositional abundances instead of absolute signal
pseq.rel <- transform(dietswap, 'compositional')
# Population density for Dialister spp.; with log10 on the abundance (X)
# axis
library(ggplot2)
p <- plot_density(pseq.rel, variable='Dialister') + scale_x_log10()
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.