Description Usage Arguments Details Value Author(s) References Examples
Plot variation in taxon abundance for many subjects.
1 2 3 4 5 6 7 8 | plot_tipping(
x,
taxon,
tipping.point = NULL,
lims = NULL,
shift = 0.001,
xlim = NULL
)
|
x |
|
taxon |
Taxonomic group to visualize. |
tipping.point |
Optional. Indicate critical point for abundance variations to be highlighted. |
lims |
Optional. Figure X axis limits. |
shift |
Small constant to avoid problems with zeroes in log10 |
xlim |
Horizontal axis limits |
Assuming the sample_data(x) has 'subject' field and some subjects have multiple time points.
ggplot
object
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation('microbiome')
1 2 3 4 | data(atlas1006)
pseq <- subset_samples(atlas1006, DNA_extraction_method == 'r')
pseq <- transform(pseq, 'compositional')
p <- plot_tipping(pseq, 'Dialister', tipping.point=1)
|
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