spreadplot: Abundance Spread Plot
In microbiome: Microbiome Analytics
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Visualize abundance spread for OTUs
Usage
1
spreadplot(x, trunc = 0.001/100, alpha = 0.15, width = 0.35)
Arguments
x
phyloseq-class object; or a data.frame with fields
"otu" (otu name); "sample" (sample name); and "abundance"
(otu abundance in the given sample)
trunc
Truncate abundances lower than this to zero
alpha
Alpha level for point transparency
width
Width for point spread
Value
ggplot2 object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1
2
data(dietswap)
p <- spreadplot(transform(dietswap, "compositional"))
microbiome documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Visualize abundance spread for OTUs
Usage
1 | spreadplot(x, trunc = 0.001/100, alpha = 0.15, width = 0.35)
|
Arguments
x |
|
trunc |
Truncate abundances lower than this to zero |
alpha |
Alpha level for point transparency |
width |
Width for point spread |
Value
ggplot2 object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1 2 | data(dietswap)
p <- spreadplot(transform(dietswap, "compositional"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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