normalizeData: Calls appropriate normalization functions depending on input...
In microbiomeExplorer: Microbiome Exploration App
Description
Usage
Arguments
Value
Examples
View source: R/aggreg_norm_functions.R
Description
Calls appropriate normalization functions depending on input parameter
The two available methods included in the package are based on either
calculating proportions or by using cumulative sum scaling (CSS),
Paulson, et al. Nat Meth 2013.
Usage
1
normalizeData(MRobj, norm_method)
Arguments
MRobj
the MRexperiment
norm_method
method to use for normalization; CSS or Proportional
Value
the normalized MRobj
Examples
1
2
data("mouseData", package = "metagenomeSeq")
normalizeData(mouseData, norm_method = "CSS")
microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.
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Description Usage Arguments Value Examples
View source: R/aggreg_norm_functions.R
Description
Calls appropriate normalization functions depending on input parameter The two available methods included in the package are based on either calculating proportions or by using cumulative sum scaling (CSS), Paulson, et al. Nat Meth 2013.
Usage
1 | normalizeData(MRobj, norm_method)
|
Arguments
MRobj |
the MRexperiment |
norm_method |
method to use for normalization; CSS or Proportional |
Value
the normalized MRobj
Examples
1 2 | data("mouseData", package = "metagenomeSeq")
normalizeData(mouseData, norm_method = "CSS")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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