plotlySampleBarplot: Function plotting a barplot showing number of OTUs per...

In microbiomeExplorer: Microbiome Exploration App

Description

Function plotting a barplot showing number of OTUs per samples

Usage

plotlySampleBarplot(
  MRobj,
  col_by = NULL,
  xaxisTitle = "",
  yaxisTitle = "",
  pwidth = 600,
  pheight = 450,
  sortbyfreq = FALSE,
  pheno_sort = NULL,
  x_levels = NULL
)

Arguments

MRobj	containing data to plot
col_by	phenotype to color bars by; default is NULL
xaxisTitle	name of xaxis; default is ""
yaxisTitle	name of yaxis; default is ""
pwidth	overall plot width; default is 600
pheight	overall plot height; default is 450
sortbyfreq	boolean determining if bars should be sorted by frequency; default is FALSE
pheno_sort	order of pheno levels to sort by; ignored if sortbyfreq is TRUE
x_levels	character vector holding x values in order to be shown

Value

plotly plot object

Examples

data("mouseData", package = "metagenomeSeq")
plotlySampleBarplot(mouseData)

microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.